From 2c8818eb795807ad59e7dcf32b300e3049bb4e98 Mon Sep 17 00:00:00 2001
From: "maimouni.mouhcine" <mouhcine.maimouni@cefe.cnrs.fr>
Date: Mon, 3 Jun 2024 09:54:42 +0200
Subject: [PATCH] Ajout du rapport
---
src/Report/report.aux | 17 +
src/Report/report.bbl | 9 +
src/Report/report.blg | 50 +++
src/Report/report.log | 568 +++++++++++++++++++++++++++++++
src/Report/report.out | 0
src/Report/report.py | 154 ++++++++-
src/pages/1-samples_selection.py | 30 +-
7 files changed, 812 insertions(+), 16 deletions(-)
create mode 100644 src/Report/report.aux
create mode 100644 src/Report/report.bbl
create mode 100644 src/Report/report.blg
create mode 100644 src/Report/report.log
create mode 100644 src/Report/report.out
diff --git a/src/Report/report.aux b/src/Report/report.aux
new file mode 100644
index 0000000..bf440a5
--- /dev/null
+++ b/src/Report/report.aux
@@ -0,0 +1,17 @@
+\relax
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+\citation{Lesnoff2020}
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+\bibcite{Lesnoff2020}{Lesnoff et~al., }
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diff --git a/src/Report/report.bbl b/src/Report/report.bbl
new file mode 100644
index 0000000..91e8e42
--- /dev/null
+++ b/src/Report/report.bbl
@@ -0,0 +1,9 @@
+\begin{thebibliography}{}
+
+\bibitem[Lesnoff et~al., ]{Lesnoff2020}
+Lesnoff, M., Metz, M., and Roger, J.
+\newblock Comparison of locally weighted pls strategies for regression and
+ discrimination on agronomic nir data.
+\newblock {\em Journal of Chemometrics}, 34(5).
+
+\end{thebibliography}
diff --git a/src/Report/report.blg b/src/Report/report.blg
new file mode 100644
index 0000000..7e22f5f
--- /dev/null
+++ b/src/Report/report.blg
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+This is BibTeX, Version 0.99d
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+Reallocating 'name_of_file' (item size: 1) to 8 items.
+The style file: apalike.bst
+Reallocating 'name_of_file' (item size: 1) to 9 items.
+Database file #1: refs.bib
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diff --git a/src/Report/report.log b/src/Report/report.log
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index 0000000..1f4d231
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+
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+File: images/logo_cefe.png Graphic file (type png)
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+[3] (report.aux)
+ ***********
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+L3 programming layer <2024-01-04>
+ ***********
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diff --git a/src/Report/report.out b/src/Report/report.out
new file mode 100644
index 0000000..e69de29
diff --git a/src/Report/report.py b/src/Report/report.py
index 180c4aa..d26eafa 100644
--- a/src/Report/report.py
+++ b/src/Report/report.py
@@ -5,13 +5,17 @@ import pandas as pd
def report(*args):
to_report=[]
+ j=0
for arg in args:
if isinstance(arg, str):
to_report.append(arg)
+ elif isinstance(arg, list):
+ to_report.extend(arg)
elif isinstance(arg, pd.DataFrame):
- df_name = 'df' + str(args.index(arg))
+ df_name = 'df' + str(j)
+ j+=1
globals()[df_name] = arg
- print(to_report)
+ #print(to_report)
latex_report = ""
latex_report += r"""\documentclass[a4paper,10pt]{article}
\usepackage{fancyhdr}
@@ -81,24 +85,146 @@ def report(*args):
Please follow this template exactly and DO NOT CHANGE THE FONT SIZE, MARGINS, HEADER, FOOTER, ETC OF THE TEMPLATE.
Start typing your paper in this font in this way. Section headings are to be in 10pt bold and full caps. Number headings consecutively. Leave a single blank line before each Section Heading and one blank line between the heading and the first line of text. When you want to start a new paragraph do not drop a line do it simply like this. Use MS Word/Latex formatting exactly as given in this paragraph. Do NOT change the spacing 'before' and 'after' to try and squeeze more in.
"""
- latex_report += df0.to_latex(escape = True)
latex_report += r"""
This is now a new paragraph which starts with a tab space and when you are starting new sentences you must put a space after the full stop. Just like this. Text should be single spaced, left and right justified, providing 25.4mm left margin and 25.4mm right margin. Leave a 25.4mm margin at top and a 25.4mm margin at bottom and the page size should be set as A4. You will also notice that the font to use is Times New Roman and the font size is 10pt.
"""
- if 'sample' in to_report:
+ if 'sample' and 'csv' in to_report:
latex_report += r"""\subsection*{Data Visualization}
Here we have a sub-heading. There is no blank line after the sub-heading. You can have one level of subheadings but not a third i.e. you cannot have Section 1.1.1 as a subheading.
+ \begin{center}
+ Spectral Data Visualization
+ \end{center}
+
+ \begin{figure}[ht]
+ \centering
+ \includegraphics[width=1\linewidth]{""" + to_report[3] + r"""}
+ \label{fig:votre_graphique}
+ \end{figure}
+
+ \textbf{Exploratory Data Analysis-Multivariable Data Analysis}
+ """
+ if 'hdb' in to_report:
+ latex_report += r"""
+ \begin{figure}[ht]
+ \centering
+ \includegraphics[width=0.5\linewidth]{""" + to_report[5] + r"""}
+ \label{fig:votre_graphique}
+ \end{figure}
+ """
+ if 'kmeans' in to_report or 'AP' in to_report:
+ latex_report += r"""
+ \begin{figure}[h]
+ \centering
+ \begin{minipage}[b]{0.33\linewidth}
+ \centering
+ \includegraphics[width=\linewidth]{""" + to_report[4] + r"""}
+ \end{minipage}%
+ \begin{minipage}[b]{0.33\linewidth}
+ \centering
+ \includegraphics[width=\linewidth]{""" + to_report[5] + r"""}
+ \end{minipage}%
+ \caption{\label{fig:frog}PCA}
+ \end{figure}
+ """
+
+ latex_report += r"""
+ This is now a new paragraph which starts with a tab space and when you are starting new sentences you must put a space after the full stop. Just like this. Text should be single spaced, left and right justified, providing 25.4mm left margin and 25.4mm right margin. Leave a 25.4mm margin at top and a 25.4mm margin at bottom and the page size should be set as A4. You will also notice that the font to use is Times New Roman and the font size is 10pt.
+
+ """
+ latex_report += r"""
+ This is now a new paragraph which starts with a tab space and when you are starting new sentences you must put a space after the full stop. Just like this. Text should be single spaced, left and right justified, providing 25.4mm left margin and 25.4mm right margin. Leave a 25.4mm margin at top and a 25.4mm margin at bottom and the page size should be set as A4. You will also notice that the font to use is Times New Roman and the font size is 10pt.
+ """
+
+ latex_report += r"""
+
+ \begin{center}
+ Graphique des PCA
+ \end{center}
+ \begin{figure}[h]
+ \centering
+ \begin{minipage}[b]{0.33\linewidth}
+ \centering
+ \includegraphics[width=\linewidth]{""" + to_report[6] + r"""}
+ \end{minipage}%
+ \begin{minipage}[b]{0.33\linewidth}
+ \centering
+ \includegraphics[width=\linewidth]{""" + to_report[7] + r"""}
+ \end{minipage}%
+ \begin{minipage}[b]{0.33\linewidth}
+ \centering
+ \includegraphics[width=\linewidth]{""" + to_report[8] + r"""}
+ \end{minipage}
+ \caption{\label{fig:frog}PCA}
+ \end{figure}
+ """
+ latex_report += r"""
+ This is now a new paragraph which starts with a tab space and when you are starting new sentences you must put a space after the full stop. Just like this. Text should be single spaced, left and right justified, providing 25.4mm left margin and 25.4mm right margin. Leave a 25.4mm margin at top and a 25.4mm margin at bottom and the page size should be set as A4. You will also notice that the font to use is Times New Roman and the font size is 10pt.
+
+
+ \begin{center}
+ \end{center}
+ \begin{figure}[h]
+ \centering
+ \begin{minipage}[b]{0.45\linewidth}
+ \centering
+ \includegraphics[width=\linewidth]{""" + to_report[9] + r"""}
+ \end{minipage}%
+ \hspace{0.05\linewidth} % Adds space between the two images
+ \begin{minipage}[b]{0.45\linewidth}
+ \centering
+ \includegraphics[width=\linewidth]{""" + to_report[10] + r"""}
+ \end{minipage}
+ \caption{\label{fig:frog}PCA}
+ \end{figure}
+ """
+ latex_report+= r"""
+ This is now a new paragraph which starts with a tab space and when you are starting new sentences you must put a space after the full stop. Just like this. Text should be single spaced, left and right justified, providing 25.4mm left margin and 25.4mm right margin. Leave a 25.4mm margin at top and a 25.4mm margin at bottom and the page size should be set as A4. You will also notice that the font to use is Times New Roman and the font size is 10pt.
+
+ \textbf{Selected samples for chemical analysis}
+ \newline
+ \newline
+ \newline
+ """
+ num_samples = to_report[0]
+ nb_clu=to_report[1]
+
+ if 'kmeans' in to_report or 'AP' in to_report:
+ latex_report += df0.to_latex(escape=True)
+ latex_report += r"""
\begin{itemize}
- \item If you want to list bullet points you can do so;
- \item This is the second point;
- \item This is a third bullet point;
- \item A fourth bullet point;
- \item But you can.
+ \item The total number of samples: """ + str(num_samples) + r"""
+ \item The number of selected samples for chemical analysis: """ + str(nb_clu) + r"""
\end{itemize}
- After a list you must leave a single blank line and remember to add the indent if you are starting a new paragraph.
+ After a list, you must leave a single blank line and remember to add the indent if you are starting a new paragraph.
+
+ """
+ if 'sample' and 'dx' in to_report:
+ latex_report += r"""\subsection*{Data Visualization}
+ \begin{center}
+ Graphique des PCA
+ \end{center}
+ \begin{figure}[h]
+ \centering
+ \begin{minipage}[b]{0.33\linewidth}
+ \centering
+ \includegraphics[width=\linewidth]{plot_axe1_axe2.png}
+ \end{minipage}%
+ \begin{minipage}[b]{0.33\linewidth}
+ \centering
+ \includegraphics[width=\linewidth]{plot_axe1_axe3.png}
+ \end{minipage}%
+ \begin{minipage}[b]{0.33\linewidth}
+ \centering
+ \includegraphics[width=\linewidth]{plot_axe2_axe3.png}
+ \end{minipage}
+ \caption{\label{fig:frog}PCA}
+ \end{figure}
+ """
+ latex_report += r"""
+ This is now a new paragraph which starts with a tab space and when you are starting new sentences you must put a space after the full stop. Just like this. Text should be single spaced, left and right justified, providing 25.4mm left margin and 25.4mm right margin. Leave a 25.4mm margin at top and a 25.4mm margin at bottom and the page size should be set as A4. You will also notice that the font to use is Times New Roman and the font size is 10pt.
"""
if 'model' in to_report:
latex_report += r"""
@@ -206,7 +332,7 @@ def report(*args):
def compile_latex():
# path to pdflatex
- pdflatex_path = Path("C:/Donnees/Logiciels/Papps/PortableApps/Notepad++Portable/LaTEX/texmfs/install/miktex/bin/")
+ pdflatex_path = Path("C:/Users/maimouni/AppData/Local/Programs/MiKTeX/miktex/bin/x64/")
filename_path = Path("Report/")
filename = 'report.tex'
# run pdflatex with bibtex compilation (2nd run)
@@ -220,9 +346,9 @@ def compile_latex():
proc.communicate()
# remove pdflatex compilation files
extensions = ['.log', '.aux', '.bbl', '.blg', '.out']
- for ext in extensions:
- os.unlink(str(filename_path / filename[:-4]) + ext)
+ #for ext in extensions:
+ #os.unlink(str(filename_path / filename[:-4]) + ext)
# open the report
proc = subprocess.Popen([str(filename[:-4]) + '.pdf'], cwd = filename_path, shell=True)
proc.communicate()
-# compile_latex()
\ No newline at end of file
+# compile_latex()
diff --git a/src/pages/1-samples_selection.py b/src/pages/1-samples_selection.py
index ad63500..6a047b5 100644
--- a/src/pages/1-samples_selection.py
+++ b/src/pages/1-samples_selection.py
@@ -11,6 +11,9 @@ from Modules import *
# # Injecter le code HTML du bandeau
# st.markdown(bandeau_html, unsafe_allow_html=True)
add_header()
+tcr=pd.DataFrame()
+sam=pd.DataFrame()
+sam1=pd.DataFrame()
local_css(css_file / "style_model.css")
@@ -69,7 +72,7 @@ if data_file:
os.unlink(tmp_path)
-
+
## Visualize spectra
if not spectra.empty:
# retrieve columns name and rows name of spectra
@@ -478,4 +481,27 @@ if not spectra.empty:
st.plotly_chart(fig, use_container_width=True)
fig.write_image("./Report/figures/graphe_hotelling.png", format="png")
#st.write()
- #st.write()
\ No newline at end of file
+ #st.write()
+Nb_ech = str(tcr.shape[0])
+nb_clu = str(sam1.shape[0])
+Ac_Km = ['Spectra_Plot.png', 'Elbow.png', 'graphe_loadings.png', 'plot_axe1_axe2.png', 'plot_axe1_axe3.png', 'plot_axe2_axe3.png', 'graphe_hotelling.png', 'graphe_influence.png']
+
+# Streamlit container
+with st.container():
+ header3, header4 = st.columns(2)
+ if header3.button("Exporter le rapport"):
+ if test == '.csv':
+ if dim_red_method == dim_red_methods[1] and clus_method == cluster_methods[1]:
+ latex_report = report.report(sam, tcr, Nb_ech, nb_clu, 'sample', Ac_Km, 'csv', 'kmeans')
+ report.compile_latex()
+ elif dim_red_method == dim_red_methods[1] and clus_method == cluster_methods[2]:
+ latex_report = report.report(sam, tcr, Nb_ech, nb_clu, 'sample', Ac_Km, 'csv', 'hdb')
+ report.compile_latex()
+ elif dim_red_method == dim_red_methods[1] and clus_method == cluster_methods[3]:
+ latex_report = report.report(sam, tcr, Nb_ech, nb_clu, 'sample', Ac_Km, 'csv', 'AP')
+ report.compile_latex()
+ else:
+ latex_report = report.report(sam, 'sample', 'dx')
+ report.compile_latex()
+ else:
+ pass
\ No newline at end of file
--
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