From d58d7e9c34b0fd1354aab32a3fc3a905e6d0838b Mon Sep 17 00:00:00 2001 From: barthes <nicolas.barthes@cefe.cnrs.fr> Date: Tue, 3 Dec 2024 09:46:55 +0100 Subject: [PATCH] update doc files & griffe package --- docs/Clustering.md | 4 ++-- docs/Dimensionality_Reduction.md | 4 ++-- docs/model_creation.md | 9 ++++++--- requirements.txt | 3 ++- 4 files changed, 12 insertions(+), 8 deletions(-) diff --git a/docs/Clustering.md b/docs/Clustering.md index 66b83df..374fc12 100644 --- a/docs/Clustering.md +++ b/docs/Clustering.md @@ -1,7 +1,7 @@ # Clustering Methods ## K-Means clustering -::: src.utils.KMEANS_.Sk_Kmeans +::: src.utils.clustering.Sk_Kmeans ## HDBSCAN clustering -::: src.utils.HDBSCAN_Clustering.Hdbscan +::: src.utils.clustering.Hdbscan diff --git a/docs/Dimensionality_Reduction.md b/docs/Dimensionality_Reduction.md index 6cf434e..2645b44 100644 --- a/docs/Dimensionality_Reduction.md +++ b/docs/Dimensionality_Reduction.md @@ -1,7 +1,7 @@ # Dimensionality Reduction methods ## PCA -::: src.utils.PCA_ +::: src.utils.dim_reduction.LinearPCA ## UMAP -::: src.utils.UMAP_ +::: src.utils.dim_reduction.Umap diff --git a/docs/model_creation.md b/docs/model_creation.md index 0313a3a..e3d4cdc 100644 --- a/docs/model_creation.md +++ b/docs/model_creation.md @@ -1,7 +1,10 @@ # Models creation -## PLSR from Pinard (scikit learn) -::: src.utils.KMEANS_.Sk_Kmeans +## PLSR from scikit learn +::: src.utils.regress.Plsr + +## PLSR with intervals selection +::: src.utils.regress.TpeIpls ## lwPlsR from Jchemo (Julia) -::: src.utils.LWPLSR_.LWPLSR \ No newline at end of file +::: src.utils.lwplsr_.LWPLSR \ No newline at end of file diff --git a/requirements.txt b/requirements.txt index 1211b24..7f64b1a 100644 --- a/requirements.txt +++ b/requirements.txt @@ -23,4 +23,5 @@ statsmodels==0.14.2 streamlit==1.33.0 umap-learn==0.5.6 watchdog==2.1.8 -xxhash==3.5.0 \ No newline at end of file +xxhash==3.5.0 +griffe==0.42.2 \ No newline at end of file -- GitLab