diff --git a/README.md b/README.md index e1efda614a170d7bdf05097f8532a277383daf49..03ce778bf2e4621977be447d1468ad02c00441e1 100644 --- a/README.md +++ b/README.md @@ -11,8 +11,8 @@ Features: * reads parsing and valitation * reads feature extraction * demultiplexing into separate fastq files -* Unique Molecule Identifiers (UMI) * Wrapper for mapping and quantification of 5'-end or 3'-end of mapped reads + * Unique Molecule Identifiers (UMI) * Post-processing of count table * filtering and normalisation * Downstream analysis @@ -22,10 +22,10 @@ Features: * Differential proportion statistical analysis Applications: -* TSS identification → tuto -* Endoribonucleolytic cleavage sites identification → tuto -* co-translational degradation -* post-transcriptional modification & differential proportion analysis → [tuto](scripts/Post-transcriptional.modifications.and.differential.proportion.analysis.Xu-2023.ipynb) +* TSS identification → [notebpok](scripts/TSS.identification.Prados-2016.ipynb] +* Endoribonucleolytic cleavage sites identification → [notebpok](scripts/Endoribonucleolytic.cleavage.sites.identification.Broglia-2020.ipynb] +* co-translational degradation → [notebpok](scripts/Co-translational.exoribonucleolytic.degradation.Khemici-2015.ipynb] +* post-transcriptional modification & differential proportion analysis → [notebpok](scripts/Post-transcriptional.modifications.and.differential.proportion.analysis.Xu-2023.ipynb) ## Installation @@ -53,3 +53,5 @@ We recommend the use a [mamba](https://mamba.readthedocs.io/) (or conda) environ * Roland Barriot * Tomas Caetano +* Gwennaele Fichant +* Peter Redder