#
# Version of PACKAGE MESONH "Open distribution"
# PACK-MNH-V5-3-0
# DATE : 23/06/2016
# VERSION : MESONH MASDEV5_3 + BUG-0
#
# MAP
#
# 0) TWO WAYS OF DOWNLOADING MESONH
# I-A) DOWNLOAD VIA THE WEB MESONH HOME PAGE
# I-B) DOWNLOAD VIA CVS ANONYMOUS
# II) CONFIGURING THE MESONH PACKAGE
# III) COMPILING/INSTALLING THE MESONH PACKAGE ON YOUR LINUX COMPUTER
# IV) RUN SOME "SMALL KTEST" EXAMPLES
# V) RECOMPILING YOUR 'OWN' SOURCES ONLY
# VI) COMPILING/INSTALLING MESONH ON GENCI & ECMWF & METEO COMPUTERS
# VII) "SCANDOLLAR" = SCRIPTING YOUR OWN PROCEDURES
#
# VIII) TROUBLE-SHOOTING
# a) Segmentation violation -> problem of "stack size" limit
# b) Compiler bug with "ifort 10.0.xxx"
#
# IX) OPTIONAL COMPILATION
# a) MNH_NCWRIT for netcdf graphic output file
# b) MNH_FOREFIRE for forefire runs ( external package needed )
# c) MNH_RTTOV for optional radiative computation
# d) cleaning previous compiled version
#
#
# 0) TWO WAYS OF DOWNLOADING MESONH
# =================================
#
# MESONH sources and executables
# http://mesonh.aero.obs-mip.fr
# are developed and maintained with the
# CVS tools ( http://www.cvshome.org/ )
#
# There are two ways to download the package of
# MESONH containing :
# - sources
# - makefiles
# - precompile exe
# - graphic tools
# - basic examples
#
# The first way is for VERY BASIC USER OF MESONH
# via a download of a "tar ball" in the WEB site of MESONH
#
# The second way is for USER/DEVELOPER of MESONH
# via the use of the CVS tools and an access via anonymous
# connection with "ssh" to the CVS REPOSITORY of the MESONH package
#
#
# REM: It is now strongly recommended, but it's not an obligation,
# for all users to use de CVS solution, because:
#
# * It's far more easy for us ( support team ) to give you some assistance
# in case of trouble ... as the CVS tool permits us to know exactly
# what you have changed in the original PACKAGE
#
# * It's much more easy for you to update to the last version ...
# or at least see the change made for BUGFIX directly on our installation .
#
#
# So here are explained the two ways <=> mutually exclusif
#
#
^L
# I-A) DOWNLOAD VIA THE WEB MESONH HOME PAGE
# ==========================================
#
# With your preferred web browser go to the MESONH WEB SITE
#
# http://mesonh.aero.obs-mip.fr/mesonh
# ---> Download
# ---> CVS MESONH
#
# or directly
#
# http://mesonh.aero.obs-mip.fr/cgi-bin/mesonh_interne/viewcvs.cgi/MNH-VX-Y-Z
#
# in the field "Show files using tag:"
#
# ---> select "PACK-MNH-V5-3-0"
#
# and then download the file "PACK-MNH-VX-Y-Z.tar.gz" by the link
#
# --> Download tarball
#
# Then untar the file "PACK-MNH-VX-Y-Z.tar.gz" where you want to,
# in your home directory for example:
#
cd ~
tar xvfz PACK-MNH-VX-Y-Z.tar.gz
#
# As the directory did not reflect the last version name move it
# to the right one
#
mv MNH-VX-Y-Z MNH-V5-3-0
#
# Process now to the chapter to configure the MesoNH
#
# => II) CONFIGURING THE MESONH PACKAGE
#
^L
# I-B) DOWNLOAD VIA CVS ANONYMOUS
# ===============================
#
# a) download the ssh key file "anoncvs.key" for anonymous connection
# -------------------------------------------------------------------
#
# With your preferred web browser go to the MESONH WEB SITE
#
# http://mesonh.aero.obs-mip.fr/mesonh
# ---> Download
# ---> CVS PACKAGE MESONH
#
# or directly
#
# http://mesonh.aero.obs-mip.fr/cgi-bin/mesonh_interne/viewcvs.cgi/MNH-VX-Y-Z
#
# in the field "Show files using tag:"
#
# ---> select "PACK-MNH-V5-3-0"
#
# download the file "anoncvs.key"
#
# by :
# 1) a "left-click" in the "Rev." column
# + 2) a "right-click" on "download"
# ---> save link to disk
# (Warning :: don't copy the file content with mouse copy/past
# because it contains binary-encoded information !!!)
#
# then copy this file in your "${HOME}/.ssh/" directory
#
# AND VERY IMPORTANT !!!
# Modify the "read/write" permission with:
#
chmod 600 anoncvs.key
#
# b) download the config file "config.anoncvs_www"
# ------------------------------------------------
#
# For METEO-FRANCE & IDRIS & CINES & Laboratoire d'Aerologie computers ( IP address filter )
# ==========================================================================================
#
# download the file
#
# --> "config.anoncvs_www"
#
# Then concatened the file content with your "${HOME}/.ssh/config" file
# ( this will define the computer alias "mesonh_anoncvs_www" for future ssh
# anonymous connections )
cd ${HOME}/.ssh
cat config.anoncvs_www >> config
#
# FOR OTHER COMPUTERS USE special "config.anoncvs_www"
# ===================================================
#
# if the computer, from which you download the MESONH sources,
# is external to METEO-FRANCE & IDRIS & CINES & Laboratoire d'Aerologie Laboratoire download this file
#
# --> "config.anoncvs_www_ext"
cd ${HOME}/.ssh
cat config.anoncvs_www_ext >> config
#
# OR for ECMWF computer ( cca ) download this config file
# ( to bypass the gateway filter )
#
# --> "config.anoncvs_www_ecmwf"
#
cd ${HOME}/.ssh
cat config.anoncvs_www_ecmwf >> config
#
# c) Setting CVS variables
# ------------------------
#
# set the CVS_RSH et CVSROOT like this
# ( in your ".profile" or ".bashrc" file )
#
export CVS_RSH=ssh
export CVSROOT=:ext:mesonh_anoncvs_www:/home/cvsroot
#
# c) Checking out the "MESONH PACKAGE"
# -------------------------------------
#
# Now, from your "$HOME" directory for example
# extract the version "PACK-MNH-V5-3-0"
# of the directory "MNH-VX-Y-Z" from the
# cvs repository :
cd ~
cvs co -r PACK-MNH-V5-3-0 -d MNH-V5-3-0 MNH-VX-Y-Z
#
# WARNING : don't use a sub-directory with dot "." in the name
# ---> you could have some trouble when compiling mesonh
#
# this will create in your "$HOME" a directory "MNH-V5-3-0"
# which contains of the last revision named "PACK-MNH-V5-3-0"
# of the MESONH PACKAGE
#
# The advantage of this way of downloading
# the package is that in the future you
# could check/update quickly differences with
# the new version of the package without having
# to download entirely the full package
#
# Suppose that a new version for example
# "PACK-MNH-V5-2-2" is announced ...
#
# To see the differences with your working copy
# do
#
cd ~/MNH-V5-3-0
cvs diff -r PACK-MNH-V5-3-1
#
# And to upgrade your working copy
#
cd ~/MNH-V5-3-0
cvs update -r PACK-MNH-V5-3-1 -d -P
#
# At any time you could also check for "uptodate"
# changes in the CVS "branch" dedicated to the MNH52 version
# before the official release of the "bugN+1" bugfix
#
cvs diff -r MNH53-BUG-branch
#
# An at "your own risk" update to this
# ( not yet official ) version by
#
cd ~/MNH-V5-3-0
cvs update -r MNH53-BUG-branch -d -P
#
# Well, the use of CVS is not under the scope of this "INSTALL" document ...
#
# Now go to then next chapter
#
# => II) CONFIGURING THE MESONH PACKAGE
#
#
^L
#
# II) CONFIGURING THE MESONH PACKAGE
# ==================================
#
# For the installation process, you could now
# use the "./configure" script like this
#
cd ~/MNH-V5-3-0/src
./configure
. ../conf/profile_mesonh
#
# this will create a configuration file "profile_mesonh" with
# an extension reflecting the different "choices" made automatically
# to match the computer on which you want to install MESONH
#
# WARNING :
# =========
# On GENCI & ECMWF & METEO/CNRM computers, the './configure' is tuned to
# identify the computer on which the command is used
# so the good compiler, mpi & cdf library , etc ...
# are automatically chosen
#
# /!\ This is not the case in your "own" personal Linux computer ...
# So is up to you to set the ARCH variable correctly
# ARCH = Fortran compiler to use,
# VER_MPI = version of MPi to, use
# OPTLEVEL =
# etc ...
# and all the other environnement variables .
#
# Be default, for an unknow computer, you will have :
#
# - the compiler choosen to be "gfortran" => ARCH=LXgfortran
# - the mpi library to be the MPIVIDE => VER_MPI=MPIVIDE
# ( empty mpi library coming with MESONH package = no parallel run possible )
# - the level compiler optimization => OPTLEVEL=DEBUG
# ( for development purpose ,fast compilation & debugging )
#
# SO IF NEEDED:
# ============
# you could change the default FLAG compiler/mpi/optlevel
# like this, for example
export ARCH=LXifort # Use Intel "ifort" compiler on LX=linux Plateform
export VER_MPI=MPIAUTO # Use MPI with compiler wrapper 'mpif90', for computer having this wrapper installed
export OPTLEVEL=O2 # Compile in O2 , 4 time faster then DEBUG, but least error check
./configure
# and then source/load the new generate file
. ../conf/profile_mesonh.LXifort.MNH-V5-3-0.MPIAUTO.O2
#
# REM:
# ====
#
# - Options specific to compile/architecture, like 'OPTLEVEL' are defined inside the "Rules.${ARCH}.mk" .
#
# - Options specific to library like "mpi"="VER_MPI" or "cdf"="VER_CDF" are defined inside "Makefile.MESONH.mk"
#
# - If need, for adaptation to your requirement, look inside the files and changes options for your needs .
#
# - On PC-Linux, if needed , look in the "MesonhTEAM Wiki" to know how to compile the library MPI = OPEN-MPI , with MESONH
#
# http://mesonh.aero.obs-mip.fr/teamwiki/MesonhTEAMFAQ/PC_Linux
# --> Compilation of OPEN-MPI
^L
#
# III) COMPILING/INSTALLING THE MESONH PACKAGE ON YOUR LINUX COMPUTER
# ===================================================================
#
# go to the directory "src"
#
cd ~/MNH-V5-3-0/src
#
# if you have not already configured your MESONH environment
# either manually in your interactive session
# or automatically through your .profile (or .bashrc), do:
#
# REM: use the configure file corresponding to your needs, cf. previous chapter
. ../conf/profile_mesonh{use_the_good_version_here}
#
# run the compilation by
#
(g)make
#
# The compilation will take about 20 minutes on modern PC-Linux ...
#
# If you have a multi-processor machine you can speedup
# the compilation, for example, on two processors with:
(g)make -j 2
#
#
# The object files "*.o" & main executables of the "MESONH PACKAGE" :
#
# MESONH , PREP_IDEAL_CASE , PREP_REAL_CASE , etc ...
#
# are compiled in one step and created in the directory
#
# dir_obj-$(ARCH).../MASTER
#
# ( REM: the lib...a is only created and removed at the link phase;
# this allows a parallel compilation of the sources ... )
#
# The exact name of this "dir_obj..." depends on the different environnement
# variables set by the "profile_mesonh...." which you have loaded before the compilation.
#
# This allow by loading different "profile_mesonh.." files to compile in the same
# source/installation directory different version of MESONH , with different
# compiler, different version of MPI , different USER sources , etc ...
#
#
# To install the new compiled program in the "$SRC_MESONH/exe"
# directory, after compilation, just run
#
make installmaster
#
# The executable with their full name, including, $ARCH , compiler
# and MPI , level of optimization, will be linked in the "../exe" directory
#
# REM:
# ---
# The "make installmaster" need to be done only one time by "version" .
# If you change/add source only you have to do "make"
make
#
# IV) RUN SOME "SMALL KTEST" EXAMPLES
# ===================================
#
# After compilation & installation you could run
# some basic "KTEST" examples from the "src" directory
# by running:
make examples
# or by giving one of the "KTEST" names in
#
# the list "001_2Drelief 002_3Drelief 003_KW78 004_Reunion 007_16janvier"
make 004_Reunion
#
# EXAMPLES USING NCL
# ===================
#
# WITH 2 OPTIONS TO CONVERT FROM LFI TO NETCDF FORMAT
# 1: with extractdia
# 2: with lfi2cdf
# Only for 2 KTEST : 004_Reunion and 007_16janvier
#
make ncl1_examples # if using extractdia
#or
make ncl2_examples # if using lfi2cdf
#
# Or by giving the KTEST name followed by _ncl1 or _ncl2
#
make 004_Reunion_ncl1
#or
make 004_Reunion_ncl2
^L
#
# V) RECOMPILING YOUR OWN SOURCES ONLY
# ====================================
#
# NOW YOU COULD GENERATE AND RECOMPILE YOUR OWN SOURCES ONLY
# ( like BIBUSER in centralised MESONH version )
#
# Suppose you want to create a "MY_MODIF" version ...
#
# Step-1 : prepare your source directory
# ---------------------------------------
#
# Put your own source in a subdirectory of "${SRC_MESONH}/src" named
#
${SRC_MESONH}/src/MY_MODIF
#
# All subdirectories in "MY_MODIF" will be scanned so if you want
# you could make a subdirectory for each component of the MESONH
# Package
#
cp .../mesonh.f90 MY_MODIF/MNH/.
cp .../isba.f90 MY_MODIF/SURFEX/.
#
# /!\ WARNING :
# -------------
# - In this subdirectory put only fortran source you want to compile !!!
# Don't use it as a trash, with old sources file like 'my_source.f90.old'
# or 'tar' files 'mysource.tar' .
# - All 'spirituous' file will confuse the 'make' commande .
#
#
# Step-2 : configure/compiling with VER_USER=...
# ----------------------------------------------
#
# - Logout of the current session, to be sure to unset all the
# environnement variables load with the your 'master 'profile_mesonh'
#
# - Login again and :
#
# - set the variable "VER_USER" with the name of your "USER VERSION",
# - set also optionnal the , ARCH, VER_MPI ,etc... , you want to use
#
# and run again the "./configure" commande
#export ARCH=...
#export VER_MPI=...
export VER_USER=MY_MODIF
./configure
#
# this will regenerate the "profile-mesonh" file and a copy
# of this with the extent "profile_mesonh...${VER_USER)..."
#
# as before load it & and compile with the command "make user"
. ../conf/profile_mesnh...${VER_USER}...
make user
# this will compilation Only your sources, and the files depending of your sources
# and generate the new executables in your own directory
#
# dir_obj-$(ARCH).../${VER_USER}
#
#
# WARNING :
# ========
# before compiling your own sources be sure that these ones
# are younger than the "*.o" files of the MASTER directory
# if any doubt, at any time use the command
#
# touch *.f*
#
# on your sources, and only on yours do that!!!
#
#
# Step-3 : running the examples
# -----------------------------
#
#
# Now if the compilatio is OK, you could to test this new version with the "make examples"
#
# First, install the new binaries in the '${SRC_MESONH}/exe' with
make installuser
# The "make installuser" need to be done only one time by "version" .
#
# And run the examples, your Version should appear in the name of the executables
# used .
#
make examples
^L
#
# VI) COMPILING/INSTALLING ON GENCI & ECMWF & METEO COMPUTERS
# ===========================================================
#
# After downloading "exactly" like on "any standalone PC"
# run the "./configure" command :
#
./configure
#
# - If you do not have sufficient space in your "$HOME" directory
# install the whole package directly on the ${WORKDIR}
#
# WARNING :
# ========
# - Think to do a backup of your installation
# - This space is not more "purged" but a "crash disk" could/will
# probably occur !!!
#
cd $WORKDIR
cvs co -r PACK-MNH-V5-3-0 -d MNH-V5-3-0 MNH-VX-Y-Z
cd MNH-V5-3-0/src
./configure
#
# Due to limitation in time & memory on interactive connection
# then compile the MESONH PACKAGE in batch mode with the different "job_make_mesonh*" files
#
# at IDRIS :
# ---------
#
# - On ADA ( IBM/x3750 ) with :
llsubmit job_make_mesonh_IBM_ada
#
#
# - On TURING (IBM BG/Q ) :
llsubmit job_make_mesonh_BGQ
#
#
# BACKUP : /!\ backup your work on "ergon"
#
#
# at CINES on JADE( SGI/ICE ) , OCCIGEN not tested yet :
# -------------------------------------------------------
#
# - install the PACKAGE in your "/store/${USER}" directory
# - you could compile in interactive mode
#
# BACKUP : /!\ backup your work on "/data/${USER}"
#
#
# at ECMWF on cca ( CRAY/XC30 ) :
# ----------------------------
#
# - to install MESONH go to your $PERM directory
# if you need more disk space than allowed for 'standard' user
# Ask to Dominique Lucas, look this email :
#
# http://mesonh.aero.obs-mip.fr/cgi-bin/mesonh_interne/mail2html.cgi?file=2009_09_24_15:31:54
#
# - for the compilation use :
qsub job_make_mesonh_CRAY_cca
#
# REM : On CRAY computer cca , the default compiler is the CRAY one = crayftn .
# I you have trouble with this one , you could compile with the Intel/ifort one .
# Use the ifort one do :
export ARCH=LXifort
./configure
...
création du fichier --> ../conf/profile_mesonh-LXifortI4-MNH-V5-3-0-MPICRAY-O2
# And for the compilation & example job , switch the ARCH variable to LXiort :
vi job_make_mesonh_CRAY_cca(job_make_examples_CRAY_cca)
ARCH=LXifort
#ARCH=LXcray # this is the default one
. ../conf/profile_mesonh-${ARCH}I4-MNH-V5-3-0-MPICRAY-O2
#
# EXAMPLES ON GENCI & ECMWF PLATFORMS
# ====================================
#
# - At IDRIS
#
# on ADA
llsubmit job_make_examples_IBM_ada
#on TURING
llsubmit job_make_examples_BGQ
#
# - At CINES on JADE( SGI/ICE ) :
#
# load ".profile_mesonh..." & set the variables :
export MONORUN="mpirun -np 1"
export MPIRUN="mpirun -np 4 "
# and run with
make examples
#
# - At ECMWF on cca
#
llsubmit job_make_examples_CRAY_cca
#
# That's all for the basic INSTALLATION of the "MESONH PACKAGE"
#
#
# VII) "SCANDOLLAR" = SCRIPTING YOUR OWN PROCEDURES
# ====================================================
REM : not tested on 5-1-X version ...
# A small script 'scandollar' is in test in this version of MESONH.
# It will help you to build a complete chaining of an experiment.
# The idea is to write some "template" scripts with '$VARIABLE' in the
# Key point. Then 'scandollar' will parse this template files
# and generate the file with the variables evaluated ...
#
# First don't forget to load your "profile_mesonh..."
#
# So how it work ...
#
# Syntaxe
export CONFEXP="YOUR_EXPERIMENT"
scandollar [list_directory]
# What is done :
#
# for all (directory) in [liste directory]
# go to this (directory)
# - read the environnement variable in the user 'confdollar' file
# - read the default environnement variable for this 'machine' in ${CONF_DOLLAR}
# - parse all the '*.ihm' file and put the transformed file
# (without extension in) in a new sub-directory '${CONFEXP}'
#
# Without [list_directory] the current directory '.' is parsed .
#
# As a demonstration the '16janvier Study Case' is build with this
# template script here :
$SRC_MESONH/MY_RUN/KTEST/007_16janvier_scandollar
#
# EXAMPLE :
# -------
#
# To parse only the first pgd step = directory '001_pgd1'
cd $SRC_MESONH/MY_RUN/KTEST/007_16janvier_scandollar/001_pgd1
export CONFEXP=512
scandollar
## OUTPUT ::
># read default config file :: ---> CONF_DOLLAR=/home/escj/DEV64/PACK-MNH-V5-3-0/conf/post/confdollar_aeropc_default
>#
># read user config file :: ---> CONFIG=confdollar
>#
># processes file *.ihm and put them in ./512/ ::
># ---> run_prep_pgd_xyz.ihm => ./512/run_prep_pgd_xyz
#
# And to run this step
#
cd $SRC_MESONH/MY_RUN/KTEST/007_16janvier_scandollar/001_pgd1/512
(qsub) run_prep_pgd_xyz # qsub on brodie
# To parse all these steps
cd $SRC_MESONH/MY_RUN/KTEST/007_16janvier_scandollar/
scandollar 0*
## OUTPUT ::
>#
># read default config file :: ---> CONF_DOLLAR=/home/escj/DEV64/PACK-MNH-V5-3-0/conf/post/confdollar_aeropc_default
>#
># read user config file :: ---> CONFIG=confdollar
>#
># processes file *.ihm and put them in 001_pgd1/512/ ::
># ---> run_prep_pgd_xyz.ihm => 001_pgd1/512/run_prep_pgd_xyz
...
># read user config file :: ---> CONFIG=confdollar
>#
># processes file *.ihm and put them in 008_run2/512/ ::
># ---> run_mesonh_xyz.ihm => 008_run2/512/run_mesonh_xyz
>#
...
># read user config file :: ---> CONFIG=confdollar
>#
># processes file *.ihm and put them in 011_diaprog/512/ ::
># ---> run_diaprog.ihm => 011_diaprog/512/run_diaprog
#
# The chaining of the differents steps is control by the "RMSHELL" variable .
# To inhibit put a "#" in it , eather in your current shell
# or in the 'confdollar' file .
export RMSHELL="#"
#
# Some 'predefine' variables are set in the '${CONF_DOLLAR}' default files
# --> One file is defined by know-computer .
#
# Are included files for 'brodie' , 'vargas' , ( babel beta-test ) , 'c1a' , 'jade' & 'aeropc*' ( = default for unknown host )
export CONF_DOLLAR=${SRC_MESONH}/conf/post/confdollar_aeropc_default
#
# You could define your own default file and use it by setting
# in your shell the 'CONF_DOLLAR' variable
# ( By default './configure' will set it for you in the profile_mesonh file )
#
# ON GENCI PLATEFORM
# ------------------
#
# You will find my "own" personal installation of MESONH
# in the next directory . If you need only to run MESONH
# without recompiliong new sources for MESONH, you could :
#
# - source/load my own "profile_mesonh" without modification
#
# - and copy the scripts examples with
cp -R 007_16janvier_scandollar /.../your_directory
#
#
# You could also copy only the differents "*/512" sub-directory
# if you don't when ti use the "scandollar" script .
#
#
# You will the need to change only information corresponding
# the location to your own path directory for the input/ouput data .
#
# So
#
# - At IDRIS :
# ==========
#
# On Brodie
# ---------
#
# use this "profile_mesonh" :
. /home/rech/mnh/rmnh007/DEV/MNH-V5-3-0/conf/profile_mesonh-SX8-MNH-V5-3-0-MPIAUTO-O4
# And the examples are here ( link to my $WORKDIR in actually )
/home/rech/mnh/rmnh007/DEV/MNH-V5-3-0/MY_RUN/KTEST/007_16janvier_scandollar
#
# On vargas
# ---------
# use this "profile_mesonh" :
. /workgpfs/rech/mnh/rmnh007/DEV/MNH-V5-3-0/conf/profile_mesonh-AIX64-MNH-V5-3-0-MPIAUTO-O2
# and examples here :
/workgpfs/rech/mnh/rmnh007/DEV/MNH-V5-3-0/MY_RUN/KTEST/007_16janvier_scandollar
#
# - At CINES on JADE :
# =================
#
# use
. /work/escobar/DEV/MNH-V5-3-0/conf/profile_mesonh-LXifort-MNH-V5-3-0-MPIICE-O2
# and the exemples
/work/escobar/DEV/MNH-V5-3-0/MY_RUN/KTEST/007_16janvier_scandollar
#
# - At ECMWF on cxa :
# ===============
#
# use
. /c1a/ms_perm/au5/MNH-V5-3-0/conf/profile_mesonh-AIX64-MNH-V5-3-0-MPIAUTO-O2
# and the examples
/c1a/ms_perm/au5/MNH-V5-3-0/MY_RUN/KTEST/007_16janvier_scandollar
#
# Good luck!!!
#
#
# VIII) TROUBLE-SHOOTING
# ======================
#
#
# a) "Segmentation violation" -> problem of "stack size" limit
# ------------------------------------------------------------
#
# When running the examples coming with the MESONH package, if you obtain
# a "segmentation violation" error it is probably a problem with
# the "stack size" limit on your Linux computer ...
#
# Check this limit with the command
ulimit -s
# The limit is given in Kbytes and is often 8192 KB
#
# ---> this mean only 8Mbytes for array in stack memory
#
# It's a very low walue !!!
#
# We recommend you to put it to "unlimited" in your
# ".bashrc" or ".profile" like this
ulimit -s unlimited
#
# b) Compiler BUG with "ifort 10.0.xxx"
# -------------------------------------
#
# Some routines do not compile with
# the version "10.0.XXX" of "ifort" ( at least until 10.0.023 )
#
# Solution ---> Upgrade to ifort "10.1.015"
#
# The ifort "10.1.008" has also some bug in the generation
# of optimized 'vectorized SSE' code resulting in unpredictable
# "Flaoting Point" error
#
# Solution ---> compile the routine with problem with '-O1' option
# or upgrade to at least "10.1.015" version
#
#
#
# IX) OPTIONAL COMPILATION
===========================
#
# a) MNH_NCWRIT for netcdf graphic output file
# --------------------------------------------
#
# If you want to use the option of writing directly netcdf file for graphical
# postprocessing ( no restart ) you could compile and use the package
# developped by Soline Bielli as exmplained in this mail
# http://mesonh.aero.obs-mip.fr/cgi-bin/mesonh_interne/mail2html.cgi?file=2012_12_19_18:35:16
# and on this wiki
# http://mesonh.aero.obs-mip.fr/mesonh410/UseNCL
#
# So before any compilation you have to set the MNH_NCWRIT variable
export MNH_NCWRIT=MNH_NCWRIT
#
# and then the configure
./configure
#
# after this compile as usually
#
make
etc ...
# see d) for cleaning previously version if needed
# b) MNH_FOREFIRE for forefire runs ( external package needed )
# -------------------------------------------------------------
#
# If you want to use coupled(inline) run with FOREFIRE and MESONH
# you could compile the interfaced/coupling routine by activating
# this variable before any compilation
export MNH_FOREFIRE=1.0
# and then the configure
./configure
#
# after this compile as usually
#
make
etc ...
#
# The FOREFIRE API package himself must be compiled independently from MesoNH
# The git repository is here https://github.com/forefireAPI/firefront/tree/2014.01
# it could be cloned by
git clone -b 2014.01 https://github.com/forefireAPI/firefront.git
# it depend on netcdf and scons for is compilation
# the "libForeFIre.so" generate must by referenced in the LD_LIBRARY_PATH
# or move/linked to the 'exe' directory of MesoNH
#
# see d) for cleaning previously version if needed
# c) MNH_RTTOV for optional radiative computation
# --------------------------------------
#
# The RTTOV package was not included into the open source version of Meso-NH
# because it needs a licence agrement.
#
# ----------------------------------
# OPTION 1: Use version 11.3 of RTTOV
# -----------------------------------
# Download the RTTOV package rttov113.tar.gz by following the instructions given on http://nwpsaf.eu/site/software/rttov/
#
# Install the RTTOV package rttov113.tar.gz
cd MNH.../src/LIB
mkdir RTTOV-11.3
cd RTTOV-11.3
tar xvfz rttov113.tar.gz
cd src
make ARCH=ifort # Use Intel "ifort" compiler; other options: gfortran, NAG, pgf90, IBM
#
# And then for the compilation, run the 'configure' script preceded with the setting of the MNH_RTTOV variable:
#
cd MNH.../src/
export MNH_RTTOV=1
export VER_RTTOV=11.3
./configure
etc ...
# ----------------------------------
# OPTION 2: Use version 8.7 of RTTOV
# ----------------------------------
# For already(old) licencied MesoNH users (MNH-4-X version with research licence see here: http://mesonh.aero.obs-mip.fr/mesonh410/UserInformation)
#
# the package could be reloaded in this way
#
# - With cvs access
#
cd MNH.../src/LIB
cvs up -rPACK-MNH-V4-10-3 -d -P RTTOV
#
# - With WEB access (with WEB login/pass as usually) the RTTOV package could also be retrieve in tarball with wget like this:
#
cd MNH.../src/LIB
wget --http-user=USER --http-password=PASS 'http://mesonh.aero.obs-mip.fr/cgi-bin/mesonh_interne/viewcvs.cgi/MNH-VX-Y-Z/src/LIB/RTTOV/?view=tar&pathrev=PACK-MNH-V4-10-3' -O RTTOV.tar.gz
tar xvfz RTTOV.tar.gz
# /!\ don't forget the ''. Otherwise, this will not work!
#
# And then for the compilation, run the 'configure' script preceded with the setting of the MNH_RTTOV variable:
#
cd MNH.../src/
export MNH_RTTOV=1
export VER_RTTOV=8.7
./configure
etc ...
# d) cleaning previous compiled version
# --------------------------------------
#
# If you have already compiled exactly the same version of MesoNH on this computer ( same $XYZ value )
# you have first to 'clean' this versio with
#
make cleanmaster
#
# this will delete the dirobj_${XYZ} directory and all the preprocessed sources contained on it ..
#
# I you have also a VER_USER version do
make cleanuser