UMAP_.py

# UMAP function for the Sample Selection module
from Packages import *
from Class_Mod.DATA_HANDLING import *


class Umap:
    """
    The UMAP dimension reduction algorithm from scikit learn
    """
    def __init__(self, data_import, numerical_data, cat_data):
        self.x = data_import
        self.numerical_data = numerical_data
        if cat_data is None:
            self.categorical_data_encoded = cat_data
        elif len(cat_data) > 0:
            self.categorical_data = cat_data
            self.le = LabelEncoder()
            self.categorical_data_encoded = self.le.fit_transform(self.categorical_data)
        else:
            self.categorical_data_encoded = None

        self.model = UMAP(n_neighbors=20, n_components=3, min_dist=0.0, random_state=42,)
        self.model.fit(self.numerical_data, y = self.categorical_data_encoded)
        self.scores_raw = self.model.transform(self.numerical_data)
        self.scores = pd.DataFrame(self.scores_raw, index = self.x.index)

    @property
    def scores_(self):
        return self.scores
    @property
    def scores_raw_(self):
        return self.scores_raw