.gitattributes

+*	text=auto
+*.tar	filter=lfs diff=lfs merge=lfs -crlf
+*.tar.gz	filter=lfs diff=lfs merge=lfs -crlf
+*/ecmwf.OD*	filter=lfs diff=lfs merge=lfs -crlf
+*CLEAN4_ops	filter=lfs diff=lfs merge=lfs -crlf
+*arpifs.*	filter=lfs diff=lfs merge=lfs -crlf
+*dasucl4_ops	filter=lfs diff=lfs merge=lfs -crlf
+bin/gmake-3.80	filter=lfs diff=lfs merge=lfs -crlf
+bin_tools/X86/*	filter=lfs diff=lfs merge=lfs -crlf
+bin_tools/X86_64/*	filter=lfs diff=lfs merge=lfs -crlf
+exe/[a-zA-Z]*	filter=lfs diff=lfs merge=lfs -crlf

.gitignore

-# Ignore the content of pack directory but not the directory itself
-/pack/**
-!/pack/.gitkeep
-
-# Ignore the content of mnh_expand directory but not the directory itself
-/mnh_expand/**
-!/mnh_expand/.gitkeep
-
-# Ignore the content of testprogs_data but not the directory itself
-/testprogs_data/ice_adjust/**
-/testprogs_data/rain_ice/**
-!/testprogs_data/ice_adjust/.gitkeep
-!/testprogs_data/rain_ice/.gitkeep
-
-# Ignore vim swapp files
-.*.swp
+conf/profile_mesonh
+conf/profile_mesonh-*
+exe/*
+MY_RUN/INTEGRATION_CASES/**/*.des
+MY_RUN/INTEGRATION_CASES/**/*.dir
+MY_RUN/INTEGRATION_CASES/**/*.hdr
+MY_RUN/INTEGRATION_CASES/**/*.nc
+MY_RUN/INTEGRATION_CASES/**/ecmwf.OD.????????.??
+MY_RUN/INTEGRATION_CASES/**/file_for_xtransfer
+MY_RUN/INTEGRATION_CASES/**/OUTPUT_LISTING*
+MY_RUN/INTEGRATION_CASES/**/PRESSURE
+MY_RUN/KTEST/*/*/*.des
+MY_RUN/KTEST/*/*/*.lfi
+MY_RUN/KTEST/*/*/*.nc
+MY_RUN/KTEST/*/*/ecmwf.OD.????????.??
+MY_RUN/KTEST/*/*/file_for_xtransfer
+MY_RUN/KTEST/*/*/gtopo30.*
+MY_RUN/KTEST/*/*/CLAY_HWSD_MOY.*
+MY_RUN/KTEST/*/*/DATA?1
+MY_RUN/KTEST/*/*/ECOCLIMAP_v2.0.*
+MY_RUN/KTEST/*/*/FICJD
+MY_RUN/KTEST/*/*/LISTING_DIA
+MY_RUN/KTEST/*/*/OUT_DIA
+MY_RUN/KTEST/*/*/OUTPUT_LISTING*
+MY_RUN/KTEST/*/*/PRESSURE
+MY_RUN/KTEST/*/*/REMAP*FFT*
+MY_RUN/KTEST/*/*/SAND_HWSD_MOY.*
+MY_RUN/KTEST/*/*/pipe_name
+MY_RUN/KTEST/*/*/__pycache__
+MY_RUN/KTEST/*/*/misc_functions.py
+MY_RUN/KTEST/*/*/Panel_Plot.py
+MY_RUN/KTEST/*/*/read_MNHfile.py
+MY_RUN/KTEST/*/*/tutorial_readme
+MY_RUN/KTEST/*/*/*.png
+MY_RUN/KTEST/*/*/*.pdf
+MY_RUN/KTEST/007_16janvier/012_spectre/spectra_16JAN.1.12B18.001_*
+MY_RUN/KTEST/009_ICARTT/001_pgd1/*.asc
+MY_RUN/KTEST/009_ICARTT/002_arp2lfi/ecmwf.OD.20040810.18-V2
+MY_RUN/KTEST/009_ICARTT/002_arp2lfi/mocage.GLOB22.20040810.18
+MY_RUN/KTEST/9??_*
+pub/FILEPP/filepp*
+!pub/FILEPP/filepp*.tar.gz
+pub/FILEPP/FILEPP*
+pub/FILEPP/MNH_Expand_*
+!pub/FILEPP/MNH_EXPAND_*.tar.gz
+src/dir_obj-*
+src/LIB/eccodes*
+!src/LIB/eccodes*.tar.gz
+src/LIB/grib_api*
+!src/LIB/grib_api*.tar.gz
+src/LIB/hdf5*
+!src/LIB/hdf5*.tar.gz
+src/LIB/libaec*
+!src/LIB/libaec*.tar.gz
+src/LIB/netcdf*
+!src/LIB/netcdf*.tar.gz
+src/LIB/MEGAN*
+src/LIB/oasis3-mct*
+!src/LIB/oasis3-mct*.tar.gz
+src/LIB/toy*
+!src/LIB/toy*.tar.gz
+vscode_mod
+.DS_Store
+*.vts
+*.vtu
+*.mp4
+src/*.eo*

A-INSTALL

+#
+# Version of PACKAGE MESONH "Open distribution"
+#              PACK-MNH-V5-7-2
+#              DATE : 16/05/2025
+#              VERSION : MESONH MASDEV5_7 + BUG-2
+#
+#  MAP
+#
+#        0) TWO WAYS OF DOWNLOADING MESONH
+#      I-A) DOWNLOAD VIA THE WEB MESONH HOME PAGE
+#      I-B) DOWNLOAD VIA GIT ANONYMOUS 
+#       II) CONFIGURING THE MESONH PACKAGE
+#      III) COMPILING/INSTALLING THE MESONH PACKAGE ON YOUR LINUX COMPUTER 
+#       IV) RUN SOME "SMALL KTEST" EXAMPLES
+#        V) RECOMPILING YOUR 'OWN' SOURCES ONLY 
+#       VI) COMPILING/INSTALLING MESONH ON GENCI & ECMWF & METEO & CALMIP COMPUTERS
+#      VII) "SCANDOLLAR" = SCRIPTING YOUR OWN PROCEDURES 
+#
+#     VIII) TROUBLE-SHOOTING
+#           a) Segmentation violation -> problem of "stack size" limit
+#           b) Compiler bug with "ifort 10.0.xxx" 
+#
+#       IX) OPTIONAL COMPILATION
+#           a) MNH_FOREFIRE for forefire runs ( external package needed )
+#           b) MNH_RTTOV for optional radiative computation
+#           c) MNH_ECRAD for optional compilation of new ECRAD radiative library from ECMWF
+#           d) MNH_MEGAN for optional compilation of MEGAN 
+#           e) cleaning previous compiled version
+#
+#
+# NEW since MNH-56X : For conda package for graphic output in test-case examples , read
+# the 'README_MNH_CONDA' file in this (root) directory
+#
+#
+^L
+#  0) TWO WAYS OF DOWNLOADING MESONH
+#  =================================
+#
+#  MESONH sources and executables 
+#  http://mesonh.aero.obs-mip.fr
+#  are developed and maintained with the
+#  Git tools ( https://git-scm.com/ )
+#
+#  There are two ways to download the package of
+#  MESONH containing :
+#    - sources 
+#    - makefiles
+#    - precompile exe 
+#    - graphic tools
+#    - basic examples
+#
+#  The first way is for VERY BASIC USER OF MESONH 
+#  via a download of a "tar ball" in the WEB site of MESONH
+#
+#  The second way is for USER/DEVELOPER of MESONH
+#  via the use of Git and an anonymous ssh connection to the Git repository of
+#  the MESONH package 
+# 
+#
+# REM: It is now strongly recommended, but not mandatory, 
+#      for all users to use the Git solution, because:
+#
+#      * It's far more easy for us ( support team ) to give you some assistance
+#        in case of trouble... as Git permits us to know exactly
+#         what you have changed in the original PACKAGE
+#
+#      * It's much more easy for you to update to the last version...  
+#        or at least see the change made for BUGFIX directly on our
+#        installation.
+#
+#
+#  Following, are presented the two mutually exclusive ways to get the MesoNH
+#  package:
+#
+#
+^L
+# I-A) DOWNLOAD VIA THE WEB MESONH HOME PAGE
+# ==========================================
+#
+# With your preferred web browser go to the MESONH WEB SITE
+#
+#  http://mesonh.aero.obs-mip.fr/mesonh
+#     ---> Download
+#
+# or directly
+#
+# http://mesonh.aero.obs-mip.fr/mesonh/dir_open/dir_MESONH/MNH-V5-7-2.tar.gz
+#
+# Then untar the file "MNH-V5-7-2.tar.gz" where you want to.
+# For example, in your home directory:
+#
+
+cd ~
+tar xvfz MNH-V5-7-2.tar.gz
+
+#
+#  Process now to the chapter to configure the MesoNH package.
+#
+# => II) CONFIGURING THE MESONH PACKAGE
+#
+^L
+# I-B) DOWNLOAD VIA GIT ANONYMOUS
+# ===============================
+#
+#    a) Prerequisites
+#    ----------------
+#
+# In order to clone the Meso-NH git repository that contains sources, compiled
+# libraries and binary tools, the git LFS extension is required to handle
+# binary (or large) files. So before starting, be sure:
+#
+#  * to have git v1.8.2 or higher installed on your workstation. You can run
+#    and check with:
+
+git --version
+
+#  * to install the git LFS extension (not included by default in the Git
+#    package):
+#    - get the linux git-lfs archive from the "Download v1.X.Y (Linux)" link on
+#      the web page https://git-lfs.github.com/
+#    - extract the archive and copy the git-lfs binary in your $HOME/bin (the
+#      provided install.sh script doesn't need to be executed)
+#    - from any directory, you can now execute:
+
+git lfs install
+
+#      that will set up some filters under the name "lfs" in the global Git
+#      config file ($HOME/.gitconfig)
+#
+#    b) Before cloning
+#    -----------------
+#
+#  * Download the private key to access the anonymous Meso-NH Git server (read-
+#    only access) by following the next link:
+#
+
+http://mesonh.aero.obs-mip.fr/mesonh57/GitSources?action=AttachFile&do=get&target=anongitmesonh.key
+
+#
+#    and save the file in your $HOME/.ssh/ directory.
+#
+#  * Change the access permissions of the key with:
+#
+
+chmod 600 $HOME/.ssh/anongitmesonh.key
+
+#
+#  * Copy/paste the following lines and add them in your $HOME/.ssh/config file
+#    (create the file if it is missing):
+#
+
+Host anongit_mesonh
+  User anongit
+  IdentityFile ~/.ssh/anongitmesonh.key
+  Hostname 195.83.22.22
+  Port 22222
+
+#
+# Before cloning the repository, execute:
+#
+
+git config --global http.sslverify false
+
+#
+# This is necessary to disable the certificate checks because a self-signed
+# certificate was used for the LFS server.
+#
+#    c) Cloning the Meso-NH Source repository on the developpement branch MNH-57-branch
+#    ----------------------------------------------------------------------------------
+#
+# Finally you can clone the Meso-NH Git repository with the following command:
+#
+
+git clone anongit@anongit_mesonh:/gitrepos/MNH-git_open_source-lfs.git -b MNH-57-branch MNH-V5-7-2
+
+#
+# that will create the MNH-V5-7-2 directory containing a clone (copy) of the
+# Meso-NH package on the remote developpement branch MNH-57-branch
+#
+#
+#   d) Checking out a given version of MESONH
+#   -----------------------------------------
+#
+# Once the repository is cloned, it's better for you to checkout your own branch
+# (by default, you are on HEAD of the MNH-57-branch development branch  ).
+#
+# To create your local branch corresponding to the V5-7-2 version, type:
+#
+
+cd MNH-V5-7-2
+git checkout -b MYB-MNH-V5-7-2 PACK-MNH-V5-7-2
+
+#
+# MYB-MNH-V5-7-2 is the name of the local branch you created
+# and
+# PACK-MNH-V5-7-2 is the remote/origin tag on which it is based.
+#
+# The advantage of this way of downloading the package is that in the future
+# you could check/update quickly differences with the new version of the
+# package without having to download entirely the full package.
+#
+#  Suppose that a new version, for example "PACK-MNH-V5-7-2", is announced.
+#
+#  To see the differences with your working copy, do:
+#
+
+git fetch
+git diff HEAD PACK-MNH-V5-7-2
+
+#
+#  To go to the new version, you can, for example, create a new local branch:
+#
+
+git checkout -b MYB-MNH-V5-7-2 PACK-MNH-V5-7-2
+
+#
+# At any time, you can also check for "uptodate" changes in the Git branch
+# dedicated to the MNH57 version before the official release of the "bugN+1"
+# bugfix version.
+#
+
+git fetch
+git diff HEAD MNH-57-branch
+
+#
+# And, test this development (not yet official) version by going to this branch:
+#
+
+git checkout --track origin/MNH-57-branch
+#
+#    e) Cloning the Meso-NH Documentation repository
+#
+# In a similar fashion, you can clone the Meso-NH documentation Git repository
+# with the following command:
+#
+
+git clone anongit@anongit_mesonh:/gitrepos/MNH-DOC.git
+
+#
+# that will create the MNH-DOC directory containing the latest LaTeX sources of
+# the Meso-NH documentation.
+
+#
+#  Well, the use of git is not under the scope of this "INSTALL" document...
+#
+#   Now, go to the next chapter 
+#
+#   => II) CONFIGURING THE MESONH PACKAGE
+#
+#
+^L
+#
+# II) CONFIGURING THE MESONH PACKAGE
+# ==================================
+#
+#    For the installation process, you could now
+#    use the "./configure" script like this 
+#
+
+cd ~/MNH-V5-7-2/src
+./configure
+. ../conf/profile_mesonh
+
+#
+#    this will create a configuration file "profile_mesonh" with
+#    an extension reflecting the different "choices" made automatically
+#    to match the computer on which you want to install MESONH
+# 
+#    WARNING :
+#    =========
+#    On GENCI & ECMWF & METEO/CNRM & METEO/DSI  computers, the './configure' is tuned to 
+#    identify the computer on which the command is used
+#    so the good compiler, MPI & netCDF libraries,... 
+#    are automatically chosen
+# 
+#    To install this version on one of these machines, go to the chapter
+#
+#    => VI) COMPILING/INSTALLING ON GENCI & ECMWF & METEO COMPUTERS
+#
+#    else follow the guidelines below.
+#
+#    /!\ This is not the case in your "own" personal Linux computer ...
+#    So is up to you to set the ARCH variable correctly
+#    ARCH     = Fortran compiler to use,
+#    VER_MPI  = version of MPI to use ,
+#    OPTLEVEL = 
+#    etc ...
+#    and all the other environnement variables. 
+# 
+#    Be default, for an unknown computer, you will have:
+#
+#   - the compiler choosen to be "gfortran" => ARCH=LXgfortran
+#   - the MPI library to be the MPIVIDE  => VER_MPI=MPIVIDE
+#     ( empty MPI library coming with MESONH package = no parallel run possible )
+#   - the level of optimization for the compiler  => OPTLEVEL=DEBUG
+#     (  for development purpose ,fast compilation & debugging )   
+#       
+#    SO IF NEEDED:
+#    ============
+#    you could change the default FLAG compiler/MPI/optlevel
+#    like this, for example 
+
+export ARCH=LXifort        # Use Intel "ifort" compiler on LX=linux Plateform 
+export VER_MPI=MPIAUTO     # Use MPI with compiler wrapper 'mpif90', for computer having this wrapper installed 
+export OPTLEVEL=O2         # Compile in O2, 4 times faster then DEBUG, but less error checks
+
+./configure
+
+#    and then source/load the new generate file
+
+. ../conf/profile_mesonh.LXifort.MNH-V5-7-2.MPIAUTO.O2
+
+#
+#  REM: 
+#  ====
+#
+#  - Options specific to compiling/architecture, like 'OPTLEVEL' are defined inside the "Rules.${ARCH}.mk" .
+#
+#  - Options specific to library like "mpi"="VER_MPI" or "cdf"="VER_CDF" are defined inside "Makefile.MESONH.mk"
+#
+#  - If needed, for adaptation to your requirements, look inside the files and changes options for your needs.
+#  
+#  - On PC-Linux, if needed, look at the "MesonhTEAM Wiki" to know how to compile the OpenMPI library with MESONH:
+#
+#    http://mesonh.aero.obs-mip.fr/teamwiki/MesonhTEAMFAQ/PC_Linux
+#      --> Compilation of OPEN-MPI
+
+^L
+#   
+# III) COMPILING/INSTALLING THE MESONH PACKAGE ON YOUR LINUX COMPUTER 
+# ===================================================================
+#
+# go to the directory  "src"
+#
+
+cd  ~/MNH-V5-7-2/src
+
+#
+# if you have not already configured your MESONH environment
+# either manually in your interactive session 
+# or automatically through your .profile (or .bashrc), do:
+#
+# REM: use the configure file corresponding to your needs, cf. previous chapter 
+
+. ../conf/profile_mesonh{use_the_good_version_here} 
+
+#
+# run the compilation by
+#
+
+(g)make
+
+#
+# The compilation will take about 20 minutes on modern PC-Linux ...
+# 
+# If you have a multi-processor machine you can speedup
+# the compilation, for example on four cores, with:
+
+(g)make -j 4
+
+#
+#
+# The  object files "*.o"  &  main executables of the "MESONH PACKAGE" :
+#
+#  MESONH , PREP_IDEAL_CASE , PREP_REAL_CASE , etc ...
+#
+#  are compiled in one step and created in the directory
+#
+#    dir_obj-$(ARCH).../MASTER
+#
+# ( REM: the lib...a is only created and removed at the link phase;
+#          this allows a parallel compilation of the sources ... ) 
+#
+# The exact name of this "dir_obj..." depends on the different environnement
+# variables set by the "profile_mesonh...." which you have loaded before the compilation.
+#
+# This allows by loading different "profile_mesonh.." files to compile in the same
+# source/installation directory different versions of MESONH , with different
+# compilers, different versions of MPI, different USER sources...
+#
+#
+# To install the new compiled program in the "$SRC_MESONH/exe"
+# directory, after compilation, just run
+#
+
+make installmaster
+
+#
+# The executables with their full name, including $ARCH, compiler,
+# MPI and level of optimization, will be linked in the "../exe" directory
+# 
+# REM: 
+# ---
+#      The "make installmaster" need to be done only one time by "version". 
+#      If you only change/add source, you have to do "make" 
+
+make
+ 
+#
+#  IV) RUN SOME "SMALL KTEST" EXAMPLES
+#  ===================================
+#
+#  After compilation & installation, you could run
+#  some basic "KTEST" examples from the "src" directory 
+#  by running:
+
+make examples 
+
+# or by giving one of the "KTEST" names in 
+#
+# the list "001_2Drelief 002_3Drelief 003_KW78 004_Reunion 007_16janvier"
+
+make 004_Reunion
+
+#
+#  EXAMPLES USING NCL
+#  ===================
+#
+#  WITH 2 OPTIONS TO CONVERT FROM LFI TO NETCDF FORMAT
+#  1: with extractdia
+#  2: with lfi2cdf
+#  Only for 2 KTEST : 004_Reunion and 007_16janvier
+#
+
+make ncl1_examples  # if using extractdia
+
+#or
+
+make ncl2_examples  # if using lfi2cdf
+
+#
+# Or by giving the KTEST name followed by _ncl1 or _ncl2
+#
+
+make 004_Reunion_ncl1
+
+#or
+
+make 004_Reunion_ncl2
+
+^L
+#
+#  V) RECOMPILING YOUR OWN SOURCES ONLY 
+#  ====================================
+#
+#  NOW YOU COULD GENERATE AND RECOMPILE YOUR OWN SOURCES ONLY
+#  ( like BIBUSER in centralised MESONH version )
+#
+#  Suppose you want to create a "MY_MODIF" version ...
+#
+# Step-1 : prepare your source directory
+# ---------------------------------------
+#
+# Put your own sources in a subdirectory of "${SRC_MESONH}/src" named 
+#  
+   
+${SRC_MESONH}/src/MY_MODIF
+
+#
+#  All subdirectories in "MY_MODIF" will be scanned. So if you want,
+#  you could make a subdirectory for each component of the MESONH
+#  Package
+#
+
+cp .../mesonh.f90 MY_MODIF/MNH/.
+cp .../isba.f90   MY_MODIF/SURFEX/.
+
+#
+#  /!\ WARNING :
+#  -------------
+#   - In this subdirectory, put only fortran source you want to compile !!!
+#   Don't use it as a trash with old sources file like 'my_source.f90.old'
+#   or 'tar' files 'mysource.tar' . 
+#   - All 'spirituous' file will confuse the 'make' command.
+#
+#   
+# Step-2 : configure/compiling with VER_USER=...
+# ----------------------------------------------
+# 
+# - Logout of the current session to be sure to unset all the 
+#   environnement variables loaded with the your 'master 'profile_mesonh'
+#
+# - Login again and:
+#
+#   - set the variable "VER_USER" with the name of your "USER VERSION",  
+#   - set also the optional ARCH, VER_MPI... you want to use.
+#  
+# and run again the "./configure" command
+
+#export ARCH=...
+#export VER_MPI=...
+export VER_USER=MY_MODIF
+./configure
+
+#
+# this will regenerate the "profile-mesonh" file and a copy
+# of this with the extent  "profile_mesonh...${VER_USER)..."
+#
+# as before load it & and compile with the command "make user"
+
+. ../conf/profile_mesonh...${VER_USER}...
+
+make user
+
+# this will compile only your sources and the files depending on your sources
+# and generate the new executables in your own directory
+#
+#   dir_obj-$(ARCH).../${VER_USER}
+#
+#
+# WARNING : 
+# ========
+#  Before compiling your own sources be sure that these ones
+#  are younger than the "*.o" files of the MASTER directory.
+#  If any doubt, at any time use the command
+#
+#      touch *.f*
+#
+#     on your sources, and only on yours do that!!!
+#
+#
+# Step-3 : running the examples 
+# -----------------------------
+#
+#
+# Now if the compilation is OK, you could test this new version with the "make examples".
+#
+# First, install the new binaries in the '${SRC_MESONH}/exe' with
+
+make installuser
+
+#   The "make installuser" needs to be done only one time by "version".
+
+#
+# And run the examples. Your version should appear in the name of the used executables.
+#
+
+make examples 
+
+^L
+#
+#   VI) COMPILING/INSTALLING ON GENCI & ECMWF & METEO & CALMIP COMPUTERS
+#   ====================================================================
+#
+#   After downloading "exactly" like on "any standalone PC" 
+#   run the "./configure" command :
+#
+
+./configure
+
+#
+#  - If you do not have sufficient space in your "$HOME" directory,
+#    install the whole package directly on the ${WORKDIR}
+#    /!\  the name of the WORKDIR differ in the differents computer center
+#    read the doc , most of them manage disk space throw 'multi-projet' with only one unique login . 
+#
+#   WARNING :
+#   ======== 
+#    - Think to do a backup of your installation 
+#    - This space is no "purged" but a "crash disk" could/will
+#      probably occur !!!
+# 
+
+cd $WORKDIR
+cd MNH-V5-7-2/src
+
+./configure
+ 
+#   
+#   Due to limitation in time & memory on interactive connection 
+#   in some computer you have to compile the MESONH PACKAGE in batch mode with the different "job_make_mesonh*" files
+#   
+#   at IDRIS :
+#   ---------
+#
+
+#   - On JEAN-ZAY ( HPE ) the compilation is in interactive :
+
+cd MNH-V5-7-2/src
+. ../conf/profile_mesonh-LXifort-R8I4-MNH-V5-7-2-MPIINTEL-O2
+make -j16 |& tee error$XYZ
+make installmaster
+
+# You could also use the 'compil' partition
+
+sbatch job_make_mesonh_HPE_jeanzay
+
+#   - to run the test case examples  run
+
+sbatch -A {your_projet}@cpu job_make_examples_BullX_jeanzay
+
+#
+#   
+#   at CINES on ADASTRA (BULLX)  :
+#   -------------------------------------------------------
+# 
+#   - install the PACKAGE in your $HOME ( default 50Go  of quota )
+#   - Compile in interactive mode ( see IDRIS )
+#
+#   - to run the test case examples  run
+
+sbatch job_make_examples_BullX_occigen
+
+#
+#   
+#   at TGCC on IRENE (BULLX)  :
+#   -------------------------------------------------------
+#
+#   At TGCC , you have two architectures accessible throw 2 differents frontals
+#   but with a commun disk space , connect to : 
+#
+#   - ssh irene-fr  : for Intel SkyLake processors
+#      On Intel processors the MPI use is OPENMPI/4.1.4
+#      the configure will generate a
+#      profile_mesonh-LXifort-R8I4-MNH-V5-7-2-MPIAUTO-O2
+#
+#   - ssh irene-amd : for AMD , processors
+#      On AMD processors the MPI use is OPENMPI/4.1.4
+#      the configure will generate a
+#      profile_mesonh-LXifort-R8I4-MNH-V5-7-2-AMD-MPIAUTO-O2
+# 
+#
+#   At TGCC they use 'one login' for multi-project allocation .
+#   This induce 'strange' problem with the installation of eccodes
+#   resulting in file with the wrong default group and 'disk quota excedeed' error
+#
+#   You could get your different project info by 'ccc_myproject'
+#
+#   I recommand you first, supposing that the "Genci Allocation" you want to use
+#   as for projet group "genXXXX"
+#
+#   1) to add  in your "~/.bash_profile"
+#
+module switch dfldatadir dfldatadir/genXXXX
+newgrp genXXXX
+
+#   2) "logout & login" again
+#      and check that you have now the good default group
+#
+id -ng
+--> genXXXX
+echo $CCCHOME
+--> /ccc/.../home/genXXXX/{your_login}
+
+#  If all is OK, you can install the code interactively as usual
+#
+#   - install the PACKAGE in your ${CCCHOME} ( default 20Go  of quota )
+#  for example on Intel frontal
+cd ${CCCHOME}
+cd MNH-V5-7-2/src
+./configure
+. ../conf/profile_mesonh-LXifort-R8I4-MNH-V5-7-2-MPIAUTO-O2
+make -j16 |& tee error$XYZ
+make installmaster
+
+# REM: The eccode lib will be installed in your ${CCCWORKDIR}
+#      also for the quota problem ...
+#    
+
+#   - to run the test case examples  run
+#
+# On intel Skylake
+ccc_msub job_make_examples_BullX_irene
+
+# On intel AMD 
+ccc_msub job_make_examples_BullX_irene_AMD
+
+# 
+#   at ECMWF on hpc-login ( ATos/HPCF ) :
+#   ------------------------------------------
+#
+#   - to install MESONH go to your $HPCPERM directory
+#
+#   - for the compilation :
+#   after the ./configure in the login node
+#
+#   connecte to an "interactive compute node"  via ( 16 core & 16GO of memory 
+
+ecinteractive -c16 -m 16G -t 12:00:00
+
+etc ...
+
+
+#   - to run the test case examples  run
+
+sbatch  job_make_examples_Atos_HPCF
+
+#
+#   - At Meteo-France DSI on belenos
+#
+#  to install the whole package on your "$HOME" directory
+#  untar the file "MNH-V5-7-2.tar.gz" from its location :
+
+cd ~
+tar xvf $MESONH/MNH-V5-7-2.tar.gz
+
+#  run the "./configure" command :
+
+cd MNH-V5-7-2/src
+./configure
+
+#
+#   Due to limitation in time & memory on interactive connection
+#   then compile the MESONH PACKAGE in batch mode with the job_make_mesonh_BullX_belenos file :
+
+sbatch   job_make_mesonh_BullX_belenos
+
+#   This job does : gmake -j 4
+#   then : make installmaster
+
+#   To run basic KTEST examples :
+
+sbatch   job_make_examples_BullX_belenos
+
+#   Step-2 : configure/compiling with VER_USER=...
+# ----------------------------------------------
+#  In a new session set the variable "VER_USER" with the name of your "USER VERSION",
+#  and run again the "./configure" command
+#
+
+export VER_USER=MY_MODIF
+./configure
+
+# this will regenerate the "profile-mesonh" file and a copy
+# of this with the extent  "profile_mesonh...${VER_USER)..."
+#
+#   in job_make_mesonh_user_BullX insert " export VER_USER=MY_MODIF "
+#   then submit in batch mode
+
+sbatch  job_make_mesonh_user_BullX_belenos
+
+#
+#   
+#   at CALMIP on OLYMPE (BULLX)  :
+#   -------------------------------------------------------
+# 
+#   - install the PACKAGE in your /tmpdir/$USER
+#   - Compile in interactive mode 
+#
+#   - to run the test case examples  run
+
+sbatch job_make_examples_BullX_olympe
+
+#
+# That's all for the basic INSTALLATION of the "MESONH PACKAGE"
+#  
+
+#
+#  VII) "SCANDOLLAR" = SCRIPTING YOUR OWN PROCEDURES 
+#  ====================================================
+
+REM : not tested on 5-5-X version ...
+
+# A small script 'scandollar' is in test in this version of MESONH.
+# It will help you to build a complete chaining of an experiment. 
+# The idea is to write some "template" scripts with '$VARIABLE' in the 
+# Key point. Then 'scandollar' will parse this template files
+# and generate the file with the variables evaluated ...
+#
+# First don't forget to load your "profile_mesonh..."
+#
+# So how it work  ...
+#
+#  Syntaxe 
+
+export CONFEXP="YOUR_EXPERIMENT"
+scandollar [list_directory]
+
+# What is done :
+#
+#   for all (directory) in [liste directory]
+#   go to this (directory)
+#    - read the environnement variable in the user 'confdollar' file 
+#    - read the default environnement variable for this 'machine' in ${CONF_DOLLAR}
+#    - parse all the '*.ihm' file and put the transformed file 
+#         (without extension in) in a new sub-directory '${CONFEXP}'
+#
+#  Without [list_directory] the current directory '.' is parsed . 
+#
+# As a demonstration the '16janvier Study Case' is build with this
+# template script here :
+
+$SRC_MESONH/MY_RUN/KTEST/007_16janvier_scandollar
+
+#
+# EXAMPLE :
+# -------
+#
+# To parse only the first pgd step = directory '001_pgd1'
+
+cd $SRC_MESONH/MY_RUN/KTEST/007_16janvier_scandollar/001_pgd1
+
+export CONFEXP=512
+scandollar
+
+## OUTPUT ::
+
+>#  read default config file :: --->  CONF_DOLLAR=/home/escj/DEV64/PACK-MNH-V5-7-2/conf/post/confdollar_aeropc_default
+>#
+>#  read    user config file :: --->  CONFIG=confdollar
+>#
+>#  processes file *.ihm and put them in ./512/ ::
+>#          ---> run_prep_pgd_xyz.ihm =>  ./512/run_prep_pgd_xyz
+
+
+#
+# And to run this step 
+#
+
+cd $SRC_MESONH/MY_RUN/KTEST/007_16janvier_scandollar/001_pgd1/512
+(qsub) run_prep_pgd_xyz # qsub on brodie 
+
+# To parse all these steps 
+
+cd $SRC_MESONH/MY_RUN/KTEST/007_16janvier_scandollar/
+scandollar 0*
+
+## OUTPUT ::
+>#
+>#  read default config file :: --->  CONF_DOLLAR=/home/escj/DEV64/PACK-MNH-V5-7-2/conf/post/confdollar_aeropc_default
+>#
+>#  read    user config file :: --->  CONFIG=confdollar
+>#
+>#  processes file *.ihm and put them in 001_pgd1/512/ ::
+>#          ---> run_prep_pgd_xyz.ihm =>  001_pgd1/512/run_prep_pgd_xyz
+...
+>#  read    user config file :: --->  CONFIG=confdollar
+>#
+>#  processes file *.ihm and put them in 008_run2/512/ ::
+>#          ---> run_mesonh_xyz.ihm =>  008_run2/512/run_mesonh_xyz
+>#
+...
+>#  read    user config file :: --->  CONFIG=confdollar
+>#
+>#  processes file *.ihm and put them in 011_diaprog/512/ ::
+>#          ---> run_diaprog.ihm =>  011_diaprog/512/run_diaprog
+
+
+#
+# The chaining of the differents steps is control by the "RMSHELL" variable .
+# To inhibit put a "#" in it , eather in your current shell
+# or in the 'confdollar' file .
+
+export RMSHELL="#"
+
+#
+# Some 'predefine' variables are set in the '${CONF_DOLLAR}' default files
+#   --> One file is defined by know-computer . 
+#
+#   Are included files for 'brodie' , 'vargas' , ( babel beta-test ) , 'c1a' , 'jade' & 'aeropc*' ( = default for unknown host )
+
+export  CONF_DOLLAR=${SRC_MESONH}/conf/post/confdollar_aeropc_default
+
+#
+#   You could define your own default file and use it by setting
+#   in your shell the  'CONF_DOLLAR' variable 
+#   ( By default './configure' will set it for you in the profile_mesonh file ) 
+
+
+#
+#  ON GENCI PLATEFORM 
+#  ------------------
+# 
+#  You will find my "own" personal installation of MESONH 
+#  in the next directory . If you need only to run MESONH
+#  without recompiliong new sources for MESONH, you could :
+#
+#  - source/load my own "profile_mesonh" without modification
+# 
+#  - and copy the scripts examples  with 
+
+cp -R  007_16janvier_scandollar /.../your_directory
+  
+#
+
+# 
+# You could also copy only the differents "*/512"  sub-directory
+# if you don't when ti use the "scandollar" script  .
+#
+# 
+#   You will the need to change only information corresponding 
+#   the location to your own path directory for the input/ouput data .
+#  
+#   So
+#
+#  - At IDRIS :
+#    ==========
+#
+#  On Brodie
+#  ---------
+#
+# use this "profile_mesonh" :
+
+.  /home/rech/mnh/rmnh007/DEV/MNH-V5-7-2/conf/profile_mesonh-SX8-MNH-V5-7-2-MPIAUTO-O4
+
+# And the examples are here ( link to my $WORKDIR in actually )  
+
+/home/rech/mnh/rmnh007/DEV/MNH-V5-7-2/MY_RUN/KTEST/007_16janvier_scandollar
+
+#
+#  On vargas
+#  ---------
+#  use this "profile_mesonh" :
+
+. /workgpfs/rech/mnh/rmnh007/DEV/MNH-V5-7-2/conf/profile_mesonh-AIX64-MNH-V5-7-2-MPIAUTO-O2
+
+# and examples here :
+
+/workgpfs/rech/mnh/rmnh007/DEV/MNH-V5-7-2/MY_RUN/KTEST/007_16janvier_scandollar
+
+# 
+#  - At CINES on JADE :
+#    =================
+#
+# use 
+
+. /work/escobar/DEV/MNH-V5-7-2/conf/profile_mesonh-LXifort-MNH-V5-7-2-MPIICE-O2
+
+# and the exemples
+
+/work/escobar/DEV/MNH-V5-7-2/MY_RUN/KTEST/007_16janvier_scandollar
+
+#
+#  - At ECMWF on cxa :
+#    ===============
+#
+# use
+
+. /c1a/ms_perm/au5/MNH-V5-7-2/conf/profile_mesonh-AIX64-MNH-V5-7-2-MPIAUTO-O2
+
+# and the examples
+
+/c1a/ms_perm/au5/MNH-V5-7-2/MY_RUN/KTEST/007_16janvier_scandollar
+
+
+#
+#  Good luck!!!
+#
+
+#
+# VIII) TROUBLE-SHOOTING
+# ======================
+#
+#
+# a) "Segmentation violation" -> problem of "stack size" limit
+# ------------------------------------------------------------
+#
+#  When running the examples coming with the MESONH package, if you obtain
+#  a "segmentation violation" error it is probably a problem with
+#  the "stack size" limit on your Linux computer ...
+#
+#  Check this limit with the command
+
+ulimit -s
+
+#  The limit is given in Kbytes and is often 8192 KB
+#
+#  ---> this mean only 8Mbytes for array in stack memory
+#
+#  It's a very low walue !!!
+#
+#  We recommend you to put it to "unlimited" in your
+#  ".bashrc" or ".profile" like this
+
+ulimit -s unlimited
+
+
+#
+# b) Compiler BUG with "ifort 10.0.xxx" 
+# -------------------------------------
+#
+#   Some routines do not compile with
+#   the version "10.0.XXX" of "ifort" ( at least until 10.0.023 )
+#
+#    Solution ---> Upgrade to ifort "10.1.015"
+#
+#   The ifort "10.1.008" has also some bug in the generation
+#   of optimized 'vectorized SSE' code resulting in unpredictable
+#   "Flaoting Point" error
+#
+#    Solution ---> compile the routine with problem with '-O1' option
+#                  or upgrade to at least "10.1.015" version
+#   
+#
+#
+# IX) OPTIONAL COMPILATION
+===========================
+# a) MNH_FOREFIRE for forefire runs ( external package needed )
+# -------------------------------------------------------------
+#
+#  If you want to use coupled(inline) run with FOREFIRE and MESONH
+#  or use routines to do high frequency parallel file dumps
+#  you could compile the interfaced/coupling routine by activating
+#  this variable before any compilation.
+#  FOREFIRE available at https://github.com/forefireAPI/forefire
+#  follow instruction to compile with option -DMPI_COUPLING to run
+#  you have to set #FOREFIREHOME to the directory where you have installed 
+#  the forefire package so it can find extras, such as web interface
+#  After compilation you must link :
+#  $MESONH/EXE/libForeFire.so with $FOREFIREHOME/lib/libforefireL.{so,dylib,dll}
+#  for the MESONH binary to find the FOREFIRE library.
+
+export MNH_FOREFIRE=1.0
+
+
+# see d) for cleaning previously version if needed
+
+# b) MNH_RTTOV for optional radiative computation
+# --------------------------------------
+#
+# The RTTOV 13.2 package was not included into the open source version of Meso-NH
+# because it needs a licence agrement.
+#
+# Run the 'configure' script preceded with the setting of the MNH_RTTOV variable:
+#
+cd $SRC_MESONH/src/
+export MNH_RTTOV=1
+export VER_RTTOV=13.2
+#
+# Compile the HDF5 library
+#
+make cdf
+#
+# Download the RTTOV package rttov132.tar.xz by following the instructions given on https://nwpsaf.eu/site/software/rttov/
+#
+# Install the RTTOV package rttov132.tar.xz
+cd $SRC_MESONH/src/LIB
+mkdir RTTOV-13.2
+cd RTTOV-13.2
+tar xJf rttov132.tar.xz
+cd build
+edit Makefile.local and set HDF5_PREFIX, FFLAGS_HDF5 and LDFLAGS_HDF5 as shown below
+"
+HDF5_PREFIX  = $(SRC_MESONH)/src/dir_obj${XYZ}/MASTER/NETCDF-${VERSION_CDFF}
+FFLAGS_HDF5  = -D_RTTOV_HDF $(FFLAG_MOD)$(HDF5_PREFIX)/include
+LDFLAGS_HDF5 = -L$(HDF5_PREFIX)/lib64 -lhdf5hl_fortran -lhdf5_hl -lhdf5_fortran -lhdf5 -lsz -laec -lz -ldl
+"
+cd ../src
+../build/Makefile.PL RTTOV_HDF=1
+make ARCH=ifort        # Use Intel "ifort" compiler; other options: gfortran, NAG, pgf90, IBM
+#
+# And then for the Meso-NH compilation, do
+#
+cd $SRC_MESONH/src/
+make
+
+# c) MNH_ECRAD for optional compilation of new ECRAD radiative library from ECMWF 
+# --------------------------------------
+#
+# The default version of ECRAD is 1.4.0 (open-source)
+#
+# Configure & Compilation
+export MNH_ECRAD=1
+./configure
+
+etc ...
+# The version of ECRAD is set by (by default):
+# export VER_ECRAD=140
+#
+# To use the previous version 1.0.1:
+#
+# The full ECRAD package 1.0.1  was not included into the open source version of Meso-NH
+# because it needs a licence agrement.
+#
+# See here to get the licence & full sources : https://software.ecmwf.int/wiki/display/ECRAD/ECMWF+Radiation+Scheme+Home
+# 
+# REM : some of the files modified for MNH are included in the directory ${SRC_MESONH}/src/LIB/RAD/ecrad-1.0.1_mnh
+# 
+# Install the ECRAD package ecrad-1.0.1.tar.gz in the MNH tree directory
+
+cd ${SRC_MESONH}/src/LIB/RAD
+tar xvfz ecrad-1.0.1.tar.gz
+
+# Configure & Compilation
+export MNH_ECRAD=1
+export VER_ECRAD=101
+./configure
+
+etc ...
+
+#
+# REM : the 'profile_mesonh...' file & the 'dir_obj...' directory will be suffixed with an ECRAD extension 
+#
+#  Usage :
+#   1) In namelist replace RAD='ECMW' by RAD='ECRA' 
+#   2) Add link to all 'ecrad-1.X.X/data' files in your mesonh run directory
+ln -sf ${SRC_MESONH}/src/LIB/RAD/ecrad-1.X.X/data/* .
+#
+# REM : you can replace CDATADIR = "." by CDATADIR = "data" of ini_radiations_ecrad.f90 to link only the data folder instead of all the files one by one
+#
+# See 007_16janvier/008_run2 test case for example
+#
+# d) MNH_MEGAN for optional compilation of MEGAN code 
+# --------------------------------------
+#
+# Configure & Compilation
+export MNH_MEGAN=1
+./configure
+
+etc ...
+# e) cleaning previous compiled version
+# --------------------------------------
+#
+# If you have already compiled exactly the same version of MesoNH on this computer ( same $XYZ value )
+# you have first to 'clean' this versio with
+#
+
+make cleanmaster
+
+#
+# this will delete the dirobj_${XYZ} directory and all the preprocessed sources contained on it ..
+#
+# I you have also a VER_USER version do
+
+make cleanuser  

History_pack

-wget http://anonymous:mto@webdav.cnrm.meteo.fr/public/algo/khatib/src/48t1_main.01.tgz
-
-Pour chacun de ces packs, le répertoire bin créé est un lien. On déplace le répertoire pour que le binaire soit effectivement sur /cnrm
-Pour tous les packs: le code provient du git, dr_hook est modifié pour ubuntu, aro_rain_ice est corrigé et l'option -ftree-vectorize est supprimée
-
-main.01: code du git
-phyex.01: code du git avec rangement dans phyex
-
-#################################
-#Ce qui suit est conservé au cas où mais n'est plus utile
-
-main.01: (-a) code du git, recompil sans rien changer
-main.02: idem main.01 mais compil 1proc, listing compil sauve
-phyex.01: (-a) code du git, split puis recompil
-phyex.02: (-a) décrit ci-dessous
-phyex.03: pour test (cf. ci-dessous)
-phyex.04: idem phyex.02 mais sur ubuntu, + correction budget RH dans aro_rain_ice
-phyex.05: idem phyex.04 mais en -O0
-phyex.06: basé sur 04, cp main/phyex local/phyex, -O0 dans ics_masterodb (gmkpack -r 48t1 -b phyex -v 04 -l MPIGFORTRAN920DBL -o xfftw -p masterodb -f /cnrm/phynh/data1/riette/DATA/202005_externalisation_physique/pack/ -h /cnrm/phynh/data1/riette/DATA/202005_externalisation_physique/pack/ -u phyex -n 06). Puis recompile en ajoutant les codes suivants dans local: arpifs/namelist/namparar.nam.h arpifs/phys_dmn/suparar.F90 arpifs/phys_dmn/apl_arome.F90 arpifs/module/yomparar.F90 mpa/turb/externals/aro_turb_mnh.F90 mpa/micro/externals/aro_convbu.F90 mpa/micro/externals/aro_lima.F90 mpa/micro/externals/aro_rain_ice.F90 mpa/micro/externals/aro_startbu.F90 mpa/micro/interface/aro_rain_ice.h
-phyex.07: idem 02 avec correction aro_rain_ice (compilé depuis lxphynh9). Manip sur libifsaux inutile => non faite!!!
-phyex.08: idem 07 mais construit sur 02 (pour modifier aro_rain_ice) plutot que recompilé entièrement
-phyex.09: idem 04 mais sans -ftree-vectorize, et avec modif libifsaux
-phyex.10: idem 09 mais compilé depuis pxphynh18 (ubuntu)
-phyex.11: idem 10 mais LANG=C.UTF-8
-phyex.12: idem 09 (sur sxphynh en ubuntu) mais avec 'export GMKTMP=/dev/shm'
-phyex.13: idem 12 mais avec 'export GMKTMP=/tmp'
-phyex.14: idem 13 mais avec 'export GMKTMP=/home/riette/mon_rep_tempo', répertoire créé pour l'occasion
-phyex.15: idem ?? mais un seul thread
-
-Manip sur les lib (2 packs sinon édition de lien trop lente):
-phyex.02: (-a) code du git, split, recompil (jusqu'ici, identique à phyex.01), modif lib (ci-dessous), recompil
-cd lib; mv libifsaux.local.a ..; cp /home/riette/packs/PHYEX/ori/lib/libifsaux.main.a libifsaux.local.a; cd ..; ./ics_masterodb
-
-Pour effectuer les tests (pour trouver qu'ifsaux est le coupable, j'ai utilisé un deuxième pack pour que l'édition de lien soit plus rapide):
-phyex.03: (basé sur phyex.02): gmkpack -r 48t1 -b phyex -v 02 -l MPIGFORTRAN920DBL -o xfftw -p masterodb -f /cnrm/phynh/data1/riette/DATA/202005_externalisation_physique/pack/ -h /cnrm/phynh/data1/riette/DATA/202005_externalisation_physique/pack/ -u phyex -n 03
-
-libs=$(for file in $(\ls *.a | grep -v libmpa | grep -v libphyex | cut -d. -f1); do echo $file; done)
-libs="libaeolus libaladin libalgor libarpifs libbiper libblacklist libcma-odb libcountryrst-odb libcoupling libcrm libdummyaeolus libdummyaladin libdummyalgor libdummyarpifs libdummybiper libdummyblacklist libdummyetrans libdummympa libdummymse libdummyodb libdummysatrad libdummysurf libdummytrans libecfftw libetrans libgrib-utilities libifsaux libifsobs libmain-odb libmse libmtocomp-odb libobstat libodb libpearome-utilities libport-odb libpregpssol-utilities libprograms-aladin libprograms-arpifs libprograms-blacklist libprograms-etrans libprograms-ifsaux libprograms-mse libprograms-satrad libprograms-scat libprograms-trans libradiation librstbias-odb libsatrad libscat libsonderst-odb libsurfex libsurf libtrans libunsxref-verbose libutilities"
-
-libs="libifsaux"
-
-do:
-for file in $libs; do rm -f ${file}.main.a; ln -s /home/riette/packs/PHYEX/ori/lib/${file}.main.a; done
-
-undo:
-for file in $libs; do rm -f ${file}.main.a; ln -s /cnrm/phynh/data1/riette/DATA/202005_externalisation_physique/pack/48t1_phyex.02.MPIGFORTRAN920DBL.xfftw/lib/${file}.local.a ${file}.main.a; done
-

INSTALL

-Some installations are needed:
-
-1) IAL REFERENCE PACK
-   The check_commit_ial.sh script, by default, build a pack on top of a precompiled pack.
-   This precompiled pack must be build beforehand. Instructions can be found in
-   ** INSTALL_pack_ial **
-
-2) MESONH REFERENCE PACK
-   The reference pack for Meso-NH must be installed. Instructions can be found in
-   ** INSTALL_pack_mesonh **
-
-3) MNH_EXPAND
-   This tool is composed of two parts: the filepp software, and the MNH_Expand_Array package.
-   Installation is described in ** INSTALL_mnh_expand **
-
-4) TESTPROGS REFERENCE DATA
-   The script check\_commit\_testprogs.sh needs reference data.
-   The data generation is explained in ** INSTALL_testprogs **

INSTALL_mnh_expand

-Two packages must be installed:
-- filepp
-- MNH_Expand_Array
-
-
-################
-filepp
-################
-In the mnh_expand directory:
-
-wget https://www-users.york.ac.uk/~dm26/filepp/filepp-1.8.0.tar.gz
-tar xvf filepp-1.8.0.tar.gz
-cd filepp-1.8.0
-./configure --prefix=$PWD
-make install
-
-Go back one directory upper and create a link:
-cd ..
-ln -s filepp-1.8.0 filepp
-
-################
-MNH_Expand_Array
-################
-In the mnh_expand directory, clone the repository found at
-https://github.com/JuanEscobarMunoz/MNH_Expand_Array.git
-
-

INSTALL_pack_ial

-#######################################################################
-Pack creation
-#######################################################################
-This document describes how to build reference packs on sxphynh and belenos.
-The following instructions focuse on the 'phyex' pack in which the physics
-have been put in a new gmkpack project, named phyex.
-
-Another pack ('main') have been produced as a super-reference without code
-move. Only a recompilation has been done.
-
-This document ends with instruction on how to use these packs. This step
-is now automatically performed with the prep_code.sh script.
-
-In these instructions, the git package have been installed in:
-sxphynh:/cnrm/phynh/data1/riette/DATA/202005_externalisation_physique
-belenos:/scratch/work/riette/202005_externalisation_physique
-Pathes must be adapted.
-
-#######################################################################
-Creation on sxphynh, to be done only once and to be shared among users:
-#######################################################################
-version=01
-
-#Get source code
-getpack 48t1_main.01.MPIGFORTRAN920DBL.xfftw
-
-export GMKTMP=/dev/shm
-
-#Create main pack
-(. berootpack)
-gmkpack -a -r 48t1 -b phyex -n $version -l MPIGFORTRAN920DBL -o xfftw -p masterodb -h /cnrm/phynh/data1/riette/DATA/202005_externalisation_physique/pack/
-
-#populate main pack with source code
-cd /cnrm/phynh/data1/riette/DATA/202005_externalisation_physique/pack/48t1_phyex.${version}.MPIGFORTRAN920DBL.xfftw/src/local
-wget http://anonymous:mto@webdav.cnrm.meteo.fr/public/algo/khatib/src/48t1_main.01.tgz
-tar xf 48t1_main.01.tgz
-rm -f 48t1_main.01.tgz
-for rep in turb micro conv; do
-  mkdir -p phyex/$rep
-  mv mpa/$rep/internals/* phyex/$rep/
-  mv mpa/$rep/module/* phyex/$rep/
-  rmdir mpa/$rep/internals mpa/$rep/module
-done
-tar xf /cnrm/algo/khatib/drhook.c_for_ubuntu.tar
-sed -i 's/IF (LBUDGET_RH)/IF (LBUDGET_RH .AND. KRR==7)/' mpa/micro/externals/aro_rain_ice.F90
-Édition de apl_arome.F90 pour modifier:
-  IF (LMFSHAL .AND. (CMF_CLOUD=='DIRE'.OR.CMF_CLOUD=='BIGA')) THEN
-    IOFF_MFSHAL=IOFF_MFSHAL+3
-    ...
-  ENDIF
-en:
-  IF (LMFSHAL .AND. (CMF_CLOUD=='DIRE'.OR.CMF_CLOUD=='BIGA')) THEN
-    IOFF_MFSHAL=IOFF_MFSHAL+3
-    ...
-  ELSE
-    DO JLEV = 1, KLEV
-      ZRC_MF_(KIDIA:KFDIA,JLEV)=0._JPRB
-      ZRI_MF_(KIDIA:KFDIA,JLEV)=0._JPRB
-      ZCF_MF_(KIDIA:KFDIA,JLEV)=0._JPRB
-    ENDDO
-  ENDIF
-Édition de apl_arome.F90 pour modifier:
-  IF ( LKFBCONV.AND.LOSUBG_COND.AND..NOT.LOSIGMAS) THEN
-      DO JLEV = 1, KLEV
-        ZMFM_(KIDIA:KFDIA,JLEV)=PSIGM(KIDIA:KFDIA,JLEV)
-      ENDDO
-    ENDIF
-en:
-  IF (LOSUBG_COND.AND..NOT.LOSIGMAS) THEN
-    IF (LKFBCONV) THEN
-      DO JLEV = 1, KLEV
-        ZMFM_(KIDIA:KFDIA,JLEV)=PSIGM(KIDIA:KFDIA,JLEV)
-      ENDDO
-    ELSE
-      DO JLEV = 1, KLEV
-        ZMFM_(KIDIA:KFDIA,JLEV)=0._JPRB
-      ENDDO
-    ENDIF
-  ENDIF
-
-#Compilation
-cd /cnrm/phynh/data1/riette/DATA/202005_externalisation_physique/pack/48t1_phyex.${version}.MPIGFORTRAN920DBL.xfftw
-grep MPA .gmkfile/MPIGFORTRAN920DBL.GMAP | sed 's/MPA/PHYEX/g' >> .gmkfile/MPIGFORTRAN920DBL.GMAP # <-------------------- to be modified by Ryad
-édition pour ajouter -DREPRO48 à la variable MACROS_FRT supprimer les corrections de bugs et assurer la reproduction avec le cy48
-édition pour retirer (ubuntu) -ftree-vectorize
-sed -i 's/GMK_THREADS=1/GMK_THREADS=10/' ics_masterodb
-cleanpack -f
-resetpack -f
-./ics_masterodb
-
-#######################################################################
-Creation on belenos, to be done only once and to be shared among users:
-#######################################################################
-version=01
-
-#Create main pack
-(. berootpack)
-gmkpack -a -r 48t1 -b phyex -n $version -l MIMPIIFC1805 -o 2y -p masterodb -h /scratch/work/riette/202005_externalisation_physique/pack/
-
-#populate main pack with source code
-cd /scratch/work/riette/202005_externalisation_physique/pack/48t1_phyex.${version}.MIMPIIFC1805.2y/src/local/
-ssh sxphynh.cnrm.meteo.fr "wget http://anonymous:mto@webdav.cnrm.meteo.fr/public/algo/khatib/src/48t1_main.01.tgz -O -" > 48t1_main.01.tg
-tar xf 48t1_main.01.tgz
-rm -f 48t1_main.01.tgz
-for rep in turb micro conv; do
-  mkdir -p phyex/$rep
-  mv mpa/$rep/internals/* phyex/$rep/
-  mv mpa/$rep/module/* phyex/$rep/
-  rmdir mpa/$rep/internals mpa/$rep/module
-done
-sed -i 's/IF (LBUDGET_RH)/IF (LBUDGET_RH .AND. KRR==7)/' mpa/micro/externals/aro_rain_ice.F90
-Édition de apl_arome.F90 pour modifier:
-  IF (LMFSHAL .AND. (CMF_CLOUD=='DIRE'.OR.CMF_CLOUD=='BIGA')) THEN
-    IOFF_MFSHAL=IOFF_MFSHAL+3
-    ...
-  ENDIF
-en:
-  IF (LMFSHAL .AND. (CMF_CLOUD=='DIRE'.OR.CMF_CLOUD=='BIGA')) THEN
-    IOFF_MFSHAL=IOFF_MFSHAL+3
-    ...
-  ELSE
-    DO JLEV = 1, KLEV
-      ZRC_MF_(KIDIA:KFDIA,JLEV)=0._JPRB
-      ZRI_MF_(KIDIA:KFDIA,JLEV)=0._JPRB
-      ZCF_MF_(KIDIA:KFDIA,JLEV)=0._JPRB
-    ENDDO
-  ENDIF
-Édition de apl_arome.F90 pour modifier:
-  IF ( LKFBCONV.AND.LOSUBG_COND.AND..NOT.LOSIGMAS) THEN
-      DO JLEV = 1, KLEV
-        ZMFM_(KIDIA:KFDIA,JLEV)=PSIGM(KIDIA:KFDIA,JLEV)
-      ENDDO
-    ENDIF
-en:
-  IF (LOSUBG_COND.AND..NOT.LOSIGMAS) THEN
-    IF (LKFBCONV) THEN
-      DO JLEV = 1, KLEV
-        ZMFM_(KIDIA:KFDIA,JLEV)=PSIGM(KIDIA:KFDIA,JLEV)
-      ENDDO
-    ELSE
-      DO JLEV = 1, KLEV
-        ZMFM_(KIDIA:KFDIA,JLEV)=0._JPRB
-      ENDDO
-    ENDIF
-  ENDIF
-
-#Compilation
-cd /scratch/work/riette/202005_externalisation_physique/pack/48t1_phyex.${version}.MIMPIIFC1805.2y/
-grep MPA .gmkfile/MIMPIIFC1805.EPONA | sed 's/MPA/PHYEX/g' >> .gmkfile/MIMPIIFC1805.EPONA # <-------------------- to be modified by Ryad
-édition pour ajouter -DREPRO48 à la variable MACROS_FRT supprimer les corrections de bugs et assurer la reproduction avec le cy48
-sed -i 's/GMK_THREADS=1/GMK_THREADS=10/' ics_masterodb
-cleanpack -f
-resetpack -f
-sbatch --wait ics_masterodb
-
-###################################
-Usage on any computer (with /cnrm):
-###################################
-
-getpack 48t1_main.01.MPIGFORTRAN920DBL.xfftw
-
-commit=9ce8119430dd603d35308d8ae94cf18636157473
-
-name="commit=$commit"
-gmkpack -r 48t1 -b phyex -v 01 -l MPIGFORTRAN920DBL -o xfftw -p masterodb -f /cnrm/phynh/data1/riette/DATA/202005_externalisation_physique/pack/ -u PHYEX/$name
-
-cd $HOMEPACK/PHYEX/$name/src/local/phyex
-git clone git@github.com:QuentinRodier/PHYEX.git
-cd PHYEX
-git checkout $commit
-for rep in turb micro conv; do
-  mv -f src/common/$rep/* ../$rep/
-  mv -f src/arome/$rep/* ../$rep/
-  touch ../$rep/*
-done
-cd ..
-rm -rf PHYEX
-
-cd $HOMEPACK/PHYEX/$name
-sed -i 's/GMK_THREADS=1/GMK_THREADS=10/' ics_masterodb
-cleanpack -f
-./ics_masterodb
-
-####################
-Usage on any belenos
-####################
-
-commit=9ce8119430dd603d35308d8ae94cf18636157473
-
-name="commit=$commit"
-gmkpack -r 48t1 -b phyex -v 01 -l MIMPIIFC1805 -o 2y -p masterodb -f /scratch/work/riette/202005_externalisation_physique/pack/ -u PHYEX/$name
-
-cd $HOMEPACK/PHYEX/$name/src/local/phyex
-git clone git@github.com:QuentinRodier/PHYEX.git
-cd PHYEX
-git checkout $commit
-for rep in turb micro conv; do
-  mv -f src/common/$rep/* ../$rep/
-  mv -f src/arome/$rep/* ../$rep/
-  touch ../$rep/*
-done
-cd ..
-rm -rf PHYEX
-
-cd $HOMEPACK/PHYEX/$name
-sed -i 's/GMK_THREADS=1/GMK_THREADS=10/' ics_masterodb
-cleanpack -f
-sbatch --wait ics_masterodb
-

INSTALL_pack_mesonh

-
-1) Compilation de la master
-Il faut installer dans le répertoire pack une version de mesonh officielle:
-cd <git repository>/pack
-scp sxphynh.cnrm.meteo.fr:/home/rodierq/MNH-V5-5-0.tar.gz .
-tar xvfz MNH-V5-5-0.tar.gz
-cd MNH-V5-5-0/src
-./configure
-. ../conf/profile_mesonh-*
-make -j 8
-make installmaster
-
-2) Lancer les étapes de pré-processing au moins une fois en master sur le KTEST :
-cd ../MY_RUN/KTEST/007_16janvier
-# J'ai modifié la namelists du cas pour activer plus d'option, récupérer le nouveau dossier de run :
-rm -Rf 008_run2; scp -r sxphynh.cnrm.meteo.fr:/home/rodierq/MNH-V5-5-0/MY_RUN/KTEST/007_16janvier/008_run2 .
-make clean
-make #l'étape 10 ne se déroule sans erreur que si un display (X11) est disponible
-     #après l'erreur, les étapes suivantes peuvent être lancées par "make E011_ncl E012_spectre"
-
-3) Récupérer le pack modifie pour accueillir PHYEX (essentiellement le makefile modifié et le répertoire PHYEX créé)
-cd <git repository>/pack
-scp sxphynh.cnrm.meteo.fr:/home/rodierq/MNH-V5-5-0_PHYEX.tar.gz .
-
-4) Certains commits ne reproduisent pas le commit de référence. En attendant la résolution du problème ces
-   commits sont contrôlés par rapport au b1e20 mais ce commit n'est pas compilable directement. Pour le
-   compiler, il faut inverser l'ordre des arguments d'appel des fonctions DZM_MF, MZM_MF, GZ_M_W_MF
-   dans les sources compute_bl89_ml, tridiag_massflux.f90 et shuman_mf.f90

INSTALL_testprogs

-The testprogs_data directory must be filled by reference data.
-These data are generated according to the description provided in the Offline documentation.
-
-The check_commit_testprogs.sh script will run offline simulations in the directory given
-by the environment variable TESTPROGSDIR ($HOME/TESTPROGS will be used if the variable is not set).
-This directory must exist.

LIBTOOLS/LIBTOOLS_CVS.TXT

+Libtools sources may be retrieved with the following commands.
+Choose a working directory to install the sources, then
+
+- To get the latest stable revision :
+
+         cvs co libtools
+
+- To get the latest development release :
+
+         cvs co -r LIBTOOLS-DEVEL-branch libtools
+
+- To get the latest CNRM development release :
+
+         cvs co -r LIBTOOLS-CNRM-branch libtools
+
+- to get the LIBTOOLS-DEVEL-1-0-2 release :
+   
+         cvs co -r LIBTOOLS-DEVEL-1-0-2 libtools
+
+
+
+
+Tags that may appear in this repository are explained below :
+
+       MAIN
+       ====
+        |               LIBTOOLS-DEVEL-branch              LIBTOOLS-CNRM-branch
+        |               =====================              ====================
+        |                         |                                 |
+        |                         |                                 |
+ LIBTOOLS-1-0-0 ------------------+---------------------------------+
+        |                         |                                 |
+        |                         |                                 |
+        |                         |                                 |
+        |                   DEV-SURC-7-4-1                          |
+        |                         |                                 |
+        |                         |                                 |
+        |                  DEV-SURC-7-4-1-1                         |
+        |                         |                                 |
+        |                         |                                 |
+        |                  DEV-SURC-7-4-1-2                         |
+        |                         |                                 |
+        |                         |                                 |
+        |                LIBTOOLS-DEVEL-1-0-1                       | 
+        |                         |                                 |
+        |                         |                                 |
+        |                         |                                 |
+        |                LIBTOOLS-DEVEL-1-0-2     merge             | 
+        |             merged_from_DEVEL_to_CNRM ---------> LIBTOOLS-CNRM-1-0-2
+        |                         |                                 |
+        .                         .                                 .
+        .                         .                                 .
+        .                         .                                 .
+
+
+
+Branch TAGS
+===========
+
+   MAIN : this branch contains official stable LibTools sources.
+  
+   LIBTOOLS-DEVEL-branch : this branch contains sources currently under 
+                           development that sooner or later are merged to
+                           main branch.
+
+   LIBTOOLS-CNRM-branch : this branch is reserved to CNRM development/tests.
+                          Sources may be merged to MAIN or LIBTOOLS-DEVEL-branch
+                          branch.
+
+
+Release TAGS
+============
+
+LIBTOOLS-x-y-z : this tag is applied to all sources of a stable LIBTOOLS release
+                 on the MAIN branch.
+
+LIBTOOLS-DEVEL-x-y-z : this tag is applied to all sources of a development LIBTOOLS 
+                       release on the LIBTOOLS-DEVEL-branch development branch.
+
+DEV-SURC-x-y... : this tag is only applied to the lib/SURCOUCHE sources on the
+                  LIBTOOLS-DEVEL-branch development branch.
+
+LIBTOOLS-CNRM-x-y... : this tag is applied to all sources of a development/test LIBTOOLS 
+                       release on the LIBTOOLS-CNRM-branch development branch.
+
+Note that all sources from LIBTOOLS-DEVEL-1-0-2 and LIBTOOLS-CNRM-1-0-2 release
+are strictly identical (except maybe for the README.TXT file).

LIBTOOLS/README.TXT

+Release tag : LIBTOOLS-CNRM-4-8-a  on September 24 2009
+
+Welcome to MESONH Libtools...
+
+Branch : LIBTOOLS-CNRM-branch
+TAG    : $Name$
+
+
+Support for gfortran ver > 4.3 and NCL/NCAR 5.1.1
+with :
+
+export ARCH=LXgfortran
+
+Documentation can be found in 'readme' directory.
+
+LaTeX sources of documentation can be found in 'readme/LATEX'
+directory : type make in the LATEX directory to build the 
+postscript documentation file : tools.ps
+
+
+How to compile ?
+
+ cd lib
+ export ARCH=LXgfortran
+ make COMPRESS
+ make NEWLFI
+ make SURCOUCHE
+ make MPIvide
+ make RAD2
+ make vis5d
+ cd gribex_1302b
+ export ARCH=linux
+ export CNAME=_gfortran
+ export A64=A64
+ make
+ 
+ cd ../../tools
+ cd diachro
+ export ARCH=LXgfortran
+ export MNH_LIBTOOLS= absolute path for libtools directory
+ make
+# The executables are in the directory LXgfortran_64 conv2dia and LXgfortran_32 for the others
+
+
+ cd ../fmmore
+ make
+
+# The executable is in the directory LXgfortran_64
+
+ cd ../lfiz
+ make
+
+# The executables ate in the directory LXgfortran
+

LIBTOOLS/conf/config.AIX32

+CPP = cc -C -E
+AR  = ar 
+F77 = xlf90 -q32 -qextname
+F90 = xlf90 -q32 -qextname
+F77FLAGS = -qfixed -O3 -qstrict
+F90FLAGS = -qfree=f90 -qsuffix=f=f90 -O3 -qstrict
+CPPFLAGS = 
+LDFLAGS = -bloadmap:map_ld

LIBTOOLS/conf/config.AIX64

+CPP = cc -C -E
+AR  = ar -X64
+F77 = xlf90_r -qarch=pwr4 -qzerosize -qautodbl=dbl4 -qmaxmem=-1
+F90 = xlf90_r -qarch=pwr4 -qzerosize -qautodbl=dbl4 -qmaxmem=-1
+F77FLAGS = -q64 -qfixed -O3 -qstrict
+F90FLAGS = -q64 -qfree=f90 -qsuffix=f=f90 -O3 -qstrict
+CFLAGS = -q64 
+CPPFLAGS = 
+LDFLAGS = -q64 -bloadmap:map_ld

LIBTOOLS/conf/config.HPNAGf95

+CPP = /usr/lib/cpp -P -C
+AR = ar
+CC = cc
+F77 = f95
+F90 = f95
+
+F90FLAGS = -f77 -kind=byte -w -mismatch_all
+F77FLAGS = -f77 -kind=byte -w -mismatch_all -dusty
+LDFLAGS  = -unsharedf95
+

LIBTOOLS/conf/config.HPf90

+CPP = /usr/lib/cpp -P -C
+AR  = ar
+F90 = f90 +DAportable
+F77 = f90 +DAportable
+
+CPPFLAGS = -DHP -DF90HP
+F90FLAGS = -w
+F77FLAGS = -w
+
+

LIBTOOLS/conf/config.LXNAGf95

+CPP = cpp -P -traditional -Wcomment
+AR = ar
+CC = cc
+F77 = f95
+F90 = f95
+
+CPPFLAGS = -DNAGf95
+#F90FLAGS = -kind=byte -w -C=all -gline
+F90FLAGS = -kind=byte -w -mismatch_all -gline
+F77FLAGS = -kind=byte -w -mismatch_all -dusty
+LDFLAGS = -unsharedf95 
+

LIBTOOLS/conf/config.LXg95

+CPP = cpp -P -traditional -Wcomment
+AR = ar
+CC = cc 
+F77 = g95
+F90 = g95
+
+CPPFLAGS = -DG95 
+F90FLAGS = -w -fno-second-underscore
+F77FLAGS = -w -fno-second-underscore
+
+LDFLAGS =  
+

LIBTOOLS/conf/config.LXgfortran

+CPP = cpp -P -traditional -Wcomment
+AR = ar
+CC = cc 
+F77 = gfortran
+F90 = gfortran
+
+CPPFLAGS = -DGFORTRAN
+F90FLAGS = -w -fno-second-underscore
+F77FLAGS = -w -fno-second-underscore
+
+LDFLAGS =  
+

LIBTOOLS/conf/config.LXifort

+CPP = cpp -P -traditional -Wcomment
+AR = ar
+CC = cc 
+F77 = ifort
+F90 = ifort
+
+CPPFLAGS = 
+F90FLAGS =
+F77FLAGS =
+
+LDFLAGS =
+

LIBTOOLS/conf/config.LXpgf90

+CPP = cpp -P -traditional -Wcomment
+AR = ar
+CC = cc
+F77 = pgf90
+F90 = pgf90
+
+CPPFLAGS = -Dpgf
+F90FLAGS = -w 
+F77FLAGS = -w 
+LDFLAGS = -Wl,-noinhibit-exec -Wl,-warn-once 
+