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Commit a93927e0 authored by DIANE's avatar DIANE
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organization of metadata

parent 200ed719
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...@@ -190,17 +190,14 @@ if labels: ...@@ -190,17 +190,14 @@ if labels:
if isinstance(selected_samples_idx[0], str): if isinstance(selected_samples_idx[0], str):
for i in range(len(selected_samples_idx)): for i in range(len(selected_samples_idx)):
e.append(np.where(np.array(spectra.index) == selected_samples_idx[i])[0]) e.append(np.where(np.array(spectra.index) == selected_samples_idx[i])[0])
selected_s.write(e)
selected_samples_idx = list(np.array(e).reshape(-1)) selected_samples_idx = list(np.array(e).reshape(-1))
else:
#############################################################################################################
selected_samples_idx = selected_samples_idx
############################# #############################
sam = pd.DataFrame({'cluster':np.array(labels)[selected_samples_idx], sam = pd.DataFrame({
'index': spectra.index[selected_samples_idx]}, 'name': spectra.index[selected_samples_idx],
'cluster':np.array(labels)[selected_samples_idx]},
index = selected_samples_idx) index = selected_samples_idx)
selected_s.write(sam) selected_s.write(sam)
...@@ -210,7 +207,7 @@ if labels: ...@@ -210,7 +207,7 @@ if labels:
selected_samples_metd.write('Corresponding meta-data') selected_samples_metd.write('Corresponding meta-data')
meta = meta_data.iloc[selected_samples_idx,:] meta = meta_data.iloc[selected_samples_idx,:]
meta['cluster'] = np.array(labels)[selected_samples_idx] meta['cluster'] = np.array(labels)[selected_samples_idx]
meta['index'] = spectra.index[selected_samples_idx] meta['index'] = selected_samples_idx
selected_samples_metd.write(meta) selected_samples_metd.write(meta)
############################################################################ ############################################################################
......
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