A-INSTALL

 #
 # Version of PACKAGE MESONH "Open distribution"
-#              PACK-MNH-V5-7-0
-#              DATE : 08/01/2024
-#              VERSION : MESONH MASDEV5_7 + BUG-0
+#              PACK-MNH-V5-7-1
+#              DATE : 04/09/2024
+#              VERSION : MESONH MASDEV5_7 + BUG-1
 #
 #  MAP
 #
@@ -84,14 +84,14 @@
 #
 # or directly
 #
-# http://mesonh.aero.obs-mip.fr/mesonh/dir_open/dir_MESONH/MNH-V5-7-0.tar.gz
+# http://mesonh.aero.obs-mip.fr/mesonh/dir_open/dir_MESONH/MNH-V5-7-1.tar.gz
 #
-# Then untar the file "MNH-V5-7-0.tar.gz" where you want to.
+# Then untar the file "MNH-V5-7-1.tar.gz" where you want to.
 # For example, in your home directory:
 #
 
 cd ~
-tar xvfz MNH-V5-7-0.tar.gz
+tar xvfz MNH-V5-7-1.tar.gz
 
 #
 #  Process now to the chapter to configure the MesoNH package.
@@ -171,10 +171,10 @@ git config --global http.sslverify false
 # Finally you can clone the Meso-NH Git repository with the following command:
 #
 
-git clone anongit@anongit_mesonh:/gitrepos/MNH-git_open_source-lfs.git -b MNH-57-branch MNH-V5-7-0
+git clone anongit@anongit_mesonh:/gitrepos/MNH-git_open_source-lfs.git -b MNH-57-branch MNH-V5-7-1
 
 #
-# that will create the MNH-V5-7-0 directory containing a clone (copy) of the
+# that will create the MNH-V5-7-1 directory containing a clone (copy) of the
 # Meso-NH package on the remote developpement branch MNH-57-branch
 #
 #
@@ -184,16 +184,16 @@ git clone anongit@anongit_mesonh:/gitrepos/MNH-git_open_source-lfs.git -b MNH-57
 # Once the repository is cloned, it's better for you to checkout your own branch
 # (by default, you are on HEAD of the MNH-57-branch development branch  ).
 #
-# To create your local branch corresponding to the V5-7-0 version, type:
+# To create your local branch corresponding to the V5-7-1 version, type:
 #
 
-cd MNH-V5-7-0
-git checkout -b MYB-MNH-V5-7-0 PACK-MNH-V5-7-0
+cd MNH-V5-7-1
+git checkout -b MYB-MNH-V5-7-1 PACK-MNH-V5-7-1
 
 #
-# MYB-MNH-V5-7-0 is the name of the local branch you created
+# MYB-MNH-V5-7-1 is the name of the local branch you created
 # and
-# PACK-MNH-V5-7-0 is the remote/origin tag on which it is based.
+# PACK-MNH-V5-7-1 is the remote/origin tag on which it is based.
 #
 # The advantage of this way of downloading the package is that in the future
 # you could check/update quickly differences with the new version of the
@@ -257,7 +257,7 @@ git clone anongit@anongit_mesonh:/gitrepos/MNH-DOC.git
 #    use the "./configure" script like this 
 #
 
-cd ~/MNH-V5-7-0/src
+cd ~/MNH-V5-7-1/src
 ./configure
 . ../conf/profile_mesonh
 
@@ -308,7 +308,7 @@ export OPTLEVEL=O2         # Compile in O2, 4 times faster then DEBUG, but less
 
 #    and then source/load the new generate file
 
-. ../conf/profile_mesonh.LXifort.MNH-V5-7-0.MPIAUTO.O2
+. ../conf/profile_mesonh.LXifort.MNH-V5-7-1.MPIAUTO.O2
 
 #
 #  REM: 
@@ -333,7 +333,7 @@ export OPTLEVEL=O2         # Compile in O2, 4 times faster then DEBUG, but less
 # go to the directory  "src"
 #
 
-cd  ~/MNH-V5-7-0/src
+cd  ~/MNH-V5-7-1/src
 
 #
 # if you have not already configured your MESONH environment
@@ -562,7 +562,7 @@ make examples
 # 
 
 cd $WORKDIR
-cd MNH-V5-7-0/src
+cd MNH-V5-7-1/src
 
 ./configure
  
@@ -576,8 +576,8 @@ cd MNH-V5-7-0/src
 
 #   - On JEAN-ZAY ( HPE ) the compilation is in interactive :
 
-cd MNH-V5-7-0/src
-. ../conf/profile_mesonh-LXifort-R8I4-MNH-V5-7-0-MPIINTEL-O2
+cd MNH-V5-7-1/src
+. ../conf/profile_mesonh-LXifort-R8I4-MNH-V5-7-1-MPIINTEL-O2
 make -j16 |& tee error$XYZ
 make installmaster
 
@@ -612,12 +612,12 @@ sbatch job_make_examples_BullX_occigen
 #   - ssh irene-fr  : for Intel SkyLake processors
 #      On Intel processors the MPI use is OPENMPI/4.1.4
 #      the configure will generate a
-#      profile_mesonh-LXifort-R8I4-MNH-V5-7-0-MPIAUTO-O2
+#      profile_mesonh-LXifort-R8I4-MNH-V5-7-1-MPIAUTO-O2
 #
 #   - ssh irene-amd : for AMD , processors
 #      On AMD processors the MPI use is OPENMPI/4.1.4
 #      the configure will generate a
-#      profile_mesonh-LXifort-R8I4-MNH-V5-7-0-AMD-MPIAUTO-O2
+#      profile_mesonh-LXifort-R8I4-MNH-V5-7-1-AMD-MPIAUTO-O2
 # 
 #
 #   At TGCC they use 'one login' for multi-project allocation .
@@ -647,9 +647,9 @@ echo $CCCHOME
 #   - install the PACKAGE in your ${CCCHOME} ( default 20Go  of quota )
 #  for example on Intel frontal
 cd ${CCCHOME}
-cd MNH-V5-7-0/src
+cd MNH-V5-7-1/src
 ./configure
-. ../conf/profile_mesonh-LXifort-R8I4-MNH-V5-7-0-MPIAUTO-O2
+. ../conf/profile_mesonh-LXifort-R8I4-MNH-V5-7-1-MPIAUTO-O2
 make -j16 |& tee error$XYZ
 make installmaster
 
@@ -689,14 +689,14 @@ sbatch  job_make_examples_Atos_HPCF
 #   - At Meteo-France DSI on belenos
 #
 #  to install the whole package on your "$HOME" directory
-#  untar the file "MNH-V5-7-0.tar.gz" from its location :
+#  untar the file "MNH-V5-7-1.tar.gz" from its location :
 
 cd ~
-tar xvf $MESONH/MNH-V5-7-0.tar.gz
+tar xvf $MESONH/MNH-V5-7-1.tar.gz
 
 #  run the "./configure" command :
 
-cd MNH-V5-7-0/src
+cd MNH-V5-7-1/src
 ./configure
 
 #
@@ -795,7 +795,7 @@ scandollar
 
 ## OUTPUT ::
 
->#  read default config file :: --->  CONF_DOLLAR=/home/escj/DEV64/PACK-MNH-V5-7-0/conf/post/confdollar_aeropc_default
+>#  read default config file :: --->  CONF_DOLLAR=/home/escj/DEV64/PACK-MNH-V5-7-1/conf/post/confdollar_aeropc_default
 >#
 >#  read    user config file :: --->  CONFIG=confdollar
 >#
@@ -817,7 +817,7 @@ scandollar 0*
 
 ## OUTPUT ::
 >#
->#  read default config file :: --->  CONF_DOLLAR=/home/escj/DEV64/PACK-MNH-V5-7-0/conf/post/confdollar_aeropc_default
+>#  read default config file :: --->  CONF_DOLLAR=/home/escj/DEV64/PACK-MNH-V5-7-1/conf/post/confdollar_aeropc_default
 >#
 >#  read    user config file :: --->  CONFIG=confdollar
 >#
@@ -891,22 +891,22 @@ cp -R  007_16janvier_scandollar /.../your_directory
 #
 # use this "profile_mesonh" :
 
-.  /home/rech/mnh/rmnh007/DEV/MNH-V5-7-0/conf/profile_mesonh-SX8-MNH-V5-7-0-MPIAUTO-O4
+.  /home/rech/mnh/rmnh007/DEV/MNH-V5-7-1/conf/profile_mesonh-SX8-MNH-V5-7-1-MPIAUTO-O4
 
 # And the examples are here ( link to my $WORKDIR in actually )  
 
-/home/rech/mnh/rmnh007/DEV/MNH-V5-7-0/MY_RUN/KTEST/007_16janvier_scandollar
+/home/rech/mnh/rmnh007/DEV/MNH-V5-7-1/MY_RUN/KTEST/007_16janvier_scandollar
 
 #
 #  On vargas
 #  ---------
 #  use this "profile_mesonh" :
 
-. /workgpfs/rech/mnh/rmnh007/DEV/MNH-V5-7-0/conf/profile_mesonh-AIX64-MNH-V5-7-0-MPIAUTO-O2
+. /workgpfs/rech/mnh/rmnh007/DEV/MNH-V5-7-1/conf/profile_mesonh-AIX64-MNH-V5-7-1-MPIAUTO-O2
 
 # and examples here :
 
-/workgpfs/rech/mnh/rmnh007/DEV/MNH-V5-7-0/MY_RUN/KTEST/007_16janvier_scandollar
+/workgpfs/rech/mnh/rmnh007/DEV/MNH-V5-7-1/MY_RUN/KTEST/007_16janvier_scandollar
 
 # 
 #  - At CINES on JADE :
@@ -914,11 +914,11 @@ cp -R  007_16janvier_scandollar /.../your_directory
 #
 # use 
 
-. /work/escobar/DEV/MNH-V5-7-0/conf/profile_mesonh-LXifort-MNH-V5-7-0-MPIICE-O2
+. /work/escobar/DEV/MNH-V5-7-1/conf/profile_mesonh-LXifort-MNH-V5-7-1-MPIICE-O2
 
 # and the exemples
 
-/work/escobar/DEV/MNH-V5-7-0/MY_RUN/KTEST/007_16janvier_scandollar
+/work/escobar/DEV/MNH-V5-7-1/MY_RUN/KTEST/007_16janvier_scandollar
 
 #
 #  - At ECMWF on cxa :
@@ -926,11 +926,11 @@ cp -R  007_16janvier_scandollar /.../your_directory
 #
 # use
 
-. /c1a/ms_perm/au5/MNH-V5-7-0/conf/profile_mesonh-AIX64-MNH-V5-7-0-MPIAUTO-O2
+. /c1a/ms_perm/au5/MNH-V5-7-1/conf/profile_mesonh-AIX64-MNH-V5-7-1-MPIAUTO-O2
 
 # and the examples
 
-/c1a/ms_perm/au5/MNH-V5-7-0/MY_RUN/KTEST/007_16janvier_scandollar
+/c1a/ms_perm/au5/MNH-V5-7-1/MY_RUN/KTEST/007_16janvier_scandollar
 
 
 #

LIBTOOLS/tools/lfi2cdf/src/lfi2cdf.f90

-!MNH_LIC Copyright 1994-2023 CNRS, Meteo-France and Universite Paul Sabatier
+!MNH_LIC Copyright 1994-2024 CNRS, Meteo-France and Universite Paul Sabatier
 !MNH_LIC This is part of the Meso-NH software governed by the CeCILL-C licence
 !MNH_LIC version 1. See LICENSE, CeCILL-C_V1-en.txt and CeCILL-C_V1-fr.txt
 !MNH_LIC for details. version 1.
@@ -59,8 +59,8 @@ program LFI2CDF
 
   ALLOCATE(TIMEZ) !Used by IO_WRITE_FIELD
 
-  NIO_VERB  = NVERB_WARNING
-  NGEN_VERB = NVERB_WARNING
+  NIO_VERB  = NVERB_INFO
+  NGEN_VERB = NVERB_INFO
   NIO_ABORT_LEVEL = NVERB_FATAL
   NGEN_ABORT_LEVEL = NVERB_FATAL
   LVERB_OUTLST = .FALSE.

LIBTOOLS/tools/lfi2cdf/src/mode_util.f90

-!MNH_LIC Copyright 1994-2023 CNRS, Meteo-France and Universite Paul Sabatier
+!MNH_LIC Copyright 1994-2024 CNRS, Meteo-France and Universite Paul Sabatier
 !MNH_LIC This is part of the Meso-NH software governed by the CeCILL-C licence
 !MNH_LIC version 1. See LICENSE, CeCILL-C_V1-en.txt and CeCILL-C_V1-fr.txt
 !MNH_LIC for details. version 1.
@@ -69,6 +69,7 @@ CONTAINS
   SUBROUTINE parse_infiles(infiles, outfiles, KNFILES_OUT, nbvar_infile, nbvar_tbr, nbvar_calc, nbvar_tbw, &
                            tpreclist, options, runmode)
     USE MODD_DIM_n,      ONLY: NIMAX_ll, NJMAX_ll, NKMAX
+    use modd_io,         only: nio_verb
     USE MODD_PARAMETERS, ONLY: JPHEXT, JPVEXT, NGRIDUNKNOWN
 
     use mode_io_tools_nc4, only: IO_Dimids_guess_nc4
@@ -126,10 +127,11 @@ CONTAINS
       kcdf_id = INFILES(1)%TFILE%NNCID
     END IF
 
-    PRINT *,'MESONH 3D, 2D articles DIMENSIONS used :'
-    PRINT *,'DIMX =',NIMAX_ll+2*JPHEXT
-    PRINT *,'DIMY =',NJMAX_ll+2*JPHEXT
-    PRINT *,'DIMZ =',NKMAX   +2*JPVEXT
+    WRITE( cmnhmsg(1), '( A )' ) 'MESONH 3D, 2D articles DIMENSIONS used :'
+    WRITE( cmnhmsg(2), '( "DIMX = ", I0 )' ) NIMAX_ll + 2 * JPHEXT
+    WRITE( cmnhmsg(3), '( "DIMY = ", I0 )' ) NJMAX_ll + 2 * JPHEXT
+    WRITE( cmnhmsg(4), '( "DIMZ = ", I0 )' ) NKMAX    + 2 * JPVEXT
+    call Print_msg( NVERB_INFO, 'IO', 'parse_infiles' )
 
     ! Phase 1 : build articles list to convert.
     !
@@ -270,10 +272,14 @@ CONTAINS
        END DO
 
        maxvar = nbvar_tbr+nbvar_calc
-DO ji=1,nbvar_tbr+nbvar_calc
-  print *,ji,'name=',tpreclist(ji)%name,' calc=',tpreclist(ji)%calc,' tbw=',tpreclist(ji)%tbw,&
-          ' tbr=',tpreclist(ji)%tbr,' found=',tpreclist(ji)%found
-END DO
+
+       if ( nio_verb >= NVERB_INFO ) then
+        do ji = 1, nbvar_tbr + nbvar_calc
+          write ( cmnhmsg(1), '( I0, " name=", A, "calc=", L1, " tbw=", L1, " tbr=", L1, " found=", L1 )' )  &
+                ji, tpreclist(ji)%name, tpreclist(ji)%calc, tpreclist(ji)%tbw, tpreclist(ji)%tbr, tpreclist(ji)%found
+          call Print_msg( NVERB_INFO, 'IO', 'parse_infiles' )
+        end do
+      end if
 
     ELSE
        ! Entire file is converted
@@ -977,7 +983,8 @@ END DO
     USE MODD_CONFZ,         ONLY: NB_PROCIO_R
     USE MODD_DIM_n,         ONLY: NIMAX_ll, NJMAX_ll, NKMAX
     USE MODD_GRID,          ONLY: XBETA, XRPK, XLAT0, XLON0, XLATORI, XLONORI
-    USE MODD_GRID_n,        ONLY: LSLEVE, XXHAT, XYHAT, XZHAT
+    USE MODD_GRID_n,        ONLY: LSLEVE, XXHAT, XXHATM, XYHAT, XYHATM, XZHAT, XZHATM, &
+                                  XXHAT_ll, XYHAT_ll, XXHATM_ll, XYHATM_ll
     USE MODD_IO,            ONLY: LIOCDF4
     USE MODD_PARAMETERS,    ONLY: JPHEXT, JPVEXT
     USE MODD_PARAMETERS_ll, ONLY: JPHEXT_ll=>JPHEXT, JPVEXT_ll=>JPVEXT
@@ -985,6 +992,7 @@ END DO
 
     USE MODE_IO_FILE,          ONLY: IO_FILE_OPEN, IO_FILE_CLOSE
     USE MODE_IO_MANAGE_STRUCT, ONLY: IO_FILE_ADD2LIST
+    USE MODE_SET_GRID,         ONLY: INTERP_VERGRID_TO_MASSPOINTS
 
     TYPE(TFILE_ELT),DIMENSION(:),INTENT(OUT) :: infiles
     TYPE(TFILE_ELT),DIMENSION(:),INTENT(OUT) :: outfiles
@@ -997,6 +1005,7 @@ END DO
 
     character(len=:), allocatable :: yunits
     INTEGER                       :: idx, IRESP2
+    integer                       :: iiu, iju, iku
     integer                       :: inb_procio_r_save
     INTEGER(KIND=CDFINT)          :: ioldmode
     INTEGER(KIND=CDFINT)          :: istatus
@@ -1019,7 +1028,11 @@ END DO
        CALL IO_FILE_ADD2LIST(INFILES(1)%TFILE,HINFILE,'MNH','READ',HFORMAT='NETCDF4')
        CALL IO_FILE_OPEN(INFILES(1)%TFILE)
 
-       nbvar_infile = INFILES(1)%TFILE%NNCNAR
+       istatus = NF90_INQUIRE( infiles(1)%tfile%nncid, nvariables=nbvar_infile )
+       if (istatus /= NF90_NOERR) then
+         call Print_msg( NVERB_FATAL, 'IO', 'OPEN_FILES', 'NF90_INQUIRE for ' &
+                         // trim(infiles(1)%tfile%cname) // '.nc: ' // NF90_STRERROR(istatus) )
+       end if
 
        !Open fallback file if provided
        if ( options( OPTFALLBACK )%set ) then
@@ -1095,18 +1108,33 @@ END DO
    if ( options( OPTFALLBACK )%set .and. iresp2 /= 0 ) CALL IO_Field_read(INFILES(2)%TFILE,'STORAGE_TYPE',CSTORAGE_TYPE,IRESP2)
    if ( iresp2 /= 0 ) call Print_msg( NVERB_ERROR, 'IO', 'OPEN_FILES', 'STORAGE_TYPE not found')
    !
-   ALLOCATE(XXHAT(NIMAX_ll+2*JPHEXT))
+   iiu = nimax_ll + 2 * JPHEXT
+   ALLOCATE( XXHAT(iiu), XXHATM(iiu) )
    CALL IO_Field_read(INFILES(1)%TFILE,'XHAT',XXHAT,IRESP2)
    !If not found in main file, try the fallback one
    if ( options( OPTFALLBACK )%set .and. iresp2 /= 0 ) CALL IO_Field_read(INFILES(2)%TFILE,'XHAT',XXHAT,IRESP2)
    if ( iresp2 /= 0 ) call Print_msg( NVERB_ERROR, 'IO', 'OPEN_FILES', 'XHAT not found')
 
-   ALLOCATE(XYHAT(NJMAX_ll+2*JPHEXT))
+   iju = njmax_ll + 2 * JPHEXT
+   ALLOCATE( XYHAT(iju), XYHATM(iju) )
    CALL IO_Field_read(INFILES(1)%TFILE,'YHAT',XYHAT,IRESP2)
    !If not found in main file, try the fallback one
    if ( options( OPTFALLBACK )%set .and. iresp2 /= 0 ) CALL IO_Field_read(INFILES(2)%TFILE,'YHAT',XYHAT,IRESP2)
    if ( iresp2 /= 0 ) call Print_msg( NVERB_ERROR, 'IO', 'OPEN_FILES', 'YHAT not found')
 
+   ! Interpolations of positions to mass points
+   XXHATM(1:IIU-1) = 0.5 * XXHAT(1:IIU-1) + 0.5 * XXHAT(2:IIU)
+   XXHATM(  IIU)   = 1.5 * XXHAT(  IIU)   - 0.5 * XXHAT(IIU-1)
+
+   XYHATM(1:IJU-1) = 0.5 * XYHAT(1:IJU-1) + 0.5 * XYHAT(2:IJU)
+   XYHATM(  IJU)   = 1.5 * XYHAT(  IJU)   - 0.5 * XYHAT(IJU-1)
+
+   ! Set global domain boundaries (hypothesis: only 1 process)
+   XXHAT_ll => XXHAT
+   XYHAT_ll => XYHAT
+   XXHATM_ll => XXHATM
+   XYHATM_ll => XYHATM
+
    CALL IO_Field_read(INFILES(1)%TFILE,'CARTESIAN',LCARTESIAN,IRESP2)
    !If not found in main file, try the fallback one
    if ( options( OPTFALLBACK )%set .and. iresp2 /= 0 ) CALL IO_Field_read(INFILES(2)%TFILE,'CARTESIAN',LCARTESIAN,IRESP2)
@@ -1146,12 +1174,16 @@ END DO
    !
    IF (TRIM(CPROGRAM_ORIG)/='PGD' .AND. TRIM(CPROGRAM_ORIG)/='NESPGD' .AND. TRIM(CPROGRAM_ORIG)/='ZOOMPG' &
        .AND. .NOT.(TRIM(CPROGRAM_ORIG)=='REAL' .AND. CSTORAGE_TYPE=='SU') ) THEN !condition to detect PREP_SURFEX
-     ALLOCATE(XZHAT(NKMAX+2*JPVEXT))
+     iku = nkmax + 2 * JPVEXT
+     ALLOCATE( XZHAT(iku), XZHATM(iku) )
      CALL IO_Field_read(INFILES(1)%TFILE,'ZHAT',XZHAT,IRESP2)
      !If not found in main file, try the fallback one
      if ( options( OPTFALLBACK )%set .and. iresp2 /= 0 ) CALL IO_Field_read(INFILES(2)%TFILE,'ZHAT',XZHAT,IRESP2)
      if ( iresp2 /= 0 ) call Print_msg( NVERB_ERROR, 'IO', 'OPEN_FILES', 'ZHAT not found')
 
+     ! Interpolations of vertical positions to mass points
+     CALL INTERP_VERGRID_TO_MASSPOINTS( XZHAT, XZHATM )
+
      ALLOCATE(LSLEVE)
      CALL IO_Field_read(INFILES(1)%TFILE,'SLEVE',LSLEVE,IRESP2)
      !If not found in main file, try the fallback one
@@ -1264,7 +1296,7 @@ END DO
      CALL IO_FILE_OPEN(outfiles(idx)%TFILE,HPROGRAM_ORIG=CPROGRAM_ORIG)
    END IF
 
-   PRINT *,'--> Converted to file: ', TRIM(houtfile)
+   call Print_msg( NVERB_INFO, 'IO', 'parse_infiles', '--> Converted to file: ' // trim(houtfile) )
 
   END SUBROUTINE OPEN_FILES
 

MY_RUN/BENCH/003_MEDATL_FULLHD/003_mesonh/run_mesonh_xyz_SEGN.ihm

-#MNH_LIC Copyright 1994-2014 CNRS, Meteo-France and Universite Paul Sabatier
+#MNH_LIC Copyright 1994-2024 CNRS, Meteo-France and Universite Paul Sabatier
 #MNH_LIC This is part of the Meso-NH software governed by the CeCILL-C licence
 #MNH_LIC version 1. See LICENSE, CeCILL-C_V1-en.txt and CeCILL-C_V1-fr.txt  
 #MNH_LIC for details. version 1.
@@ -54,7 +54,6 @@ cat > EXSEG1.nam  << EOF
 &NAM_DYNn 
  XTSTEP = ${XTSTEP} ,
  CPRESOPT = "CRESI",
- NITR = 12, 
  LITRADJ = T,
  XRELAX = 1.,
  LHORELAX_UVWTH = T,

MY_RUN/INTEGRATION_CASES/HPC/16JAN/PYTHON/plot_16JAN.py

@@ -17,7 +17,7 @@ os.system('rm -f tempgraph*')
 #  User's parameter / Namelist
 #
 #
-path="../RUN/NETCDF/"
+path="../RUN/"
 LnameFiles = ['16JA1.1.WENO5.004dg.nc', '16JA2.2.WENO5.002dg.nc']
 
 Dvar_input = {

MY_RUN/INTEGRATION_CASES/HPC/16JAN/RUN/DIAG1.nam_1

@@ -15,7 +15,10 @@
   LCLD_COV=T, 
   NCAPE=1,
   LRADAR=T,
-  LDIAG(:)=.FALSE. /
+  LDIAG(:)=.FALSE.,
+  LISOAL=T, XISOAL(1)=9000,
+  LISOPR=T, XISOPR(1)=850, XISOPR(2)=700 /
+
 &NAM_DIAG_FILE      YINIFILE(1) = "16JA1.1.WENO5.004" ,
                     YINIFILEPGD(1) = "16JAN98_36km.neste1",
                     YSUFFIX='dg' /

MY_RUN/INTEGRATION_CASES/HPC/16JAN/RUN/DIAG1.nam_2

 &NAM_CONFIO  LCDF4=T, LLFIOUT=F, LLFIREAD=F /
-&NAM_DIAG CISO='', LVAR_RS=F, LVAR_LS=F, LVAR_PR=T, LTOTAL_PR=T /
+&NAM_DIAG CISO='', LVAR_RS=F, LVAR_LS=F, LVAR_PR=T, LTOTAL_PR=T,
+  LISOAL=T, XISOAL(1)=9000,
+  LISOPR=T, XISOPR(1)=850, XISOPR(2)=700 /
 &NAM_BLANK /
 &NAM_DIAG_FILE  YINIFILE(1) = "16JA2.2.WENO5.002",
                 YINIFILEPGD(1) = "16JAN98_9km.neste1",

MY_RUN/INTEGRATION_CASES/HPC/16JAN/RUN/EXSEG1.nam_run1

@@ -18,7 +18,7 @@
 &NAM_TURBn CTURBLEN = "BL89", CTURBDIM = "1DIM",
            LTURB_DIAG = F, LTURB_FLX = F /
 &NAM_CONF CCONF = "START", NMODEL = 1, NVERB = 5,
-           CEXP = "16JA1v ", CSEG = "WENO5",NHALO=3 /
+           CEXP = "16JA1 ", CSEG = "WENO5",NHALO=3 /
 &NAM_DYN  XSEGLEN = 43200., LCORIO = T, LNUMDIFU = F,LNUMDIFTH = F,
           XALKTOP = 0.001, XALZBOT = 15000. /
 &NAM_BACKUP XBAK_TIME(1,1)=10800., XBAK_TIME(1,2)=21600.,XBAK_TIME(1,3)=32400.,XBAK_TIME(1,4)=43200./

MY_RUN/INTEGRATION_CASES/HPC/16JAN/RUN/run_diag

@@ -39,12 +39,4 @@ mv OUTPUT_LISTING1  OUTPUT_LISTING1_diag2
 
 rm -f DIAG1.nam
 rm -f file_for_xtransfer pipe_name
-ls -lrt
-mkdir OUTPUT
-mv OUTPUT_L* OUTPUT
-mkdir LFI
-mv *.lfi LFI/.
-mv *.des LFI/.
-mkdir NETCDF
-mv *.nc NETCDF
 ja

MY_RUN/INTEGRATION_CASES/HPC/16JAN/RUN/run_pgd

@@ -33,7 +33,6 @@ rm -f 16JAN98_36km.???
 cp PRE_PGD1.nam_1 PRE_PGD1.nam
 time ${MPIRUN} PREP_PGD${XYZ}
 mv OUTPUT_LISTING0  OUTPUT_LISTING0_pgd36km
-touch 16JAN98_36km.des
 
 ls -lrt
 
@@ -42,7 +41,6 @@ rm -f 16JAN98_9km.???
 cp PRE_PGD1.nam_2 PRE_PGD1.nam
 time ${MPIRUN} PREP_PGD${XYZ}
 mv OUTPUT_LISTING0  OUTPUT_LISTING0_pgd9km
-touch 16JAN98_9km.des
 
 ls -lrt
 
@@ -50,8 +48,6 @@ ls -lrt
 rm -f *.neste1.*
 time ${MPIRUN} PREP_NEST_PGD${XYZ}
 mv OUTPUT_LISTING0  OUTPUT_LISTING0_nest
-touch 16JAN98_36km.neste1.des
-touch 16JAN98_9km.neste1.des
 
 ls -lrt
 rm -f *.dir *.hdr

MY_RUN/INTEGRATION_CASES/HPC/ARMCU_LES/DEAR/run_mesonh

@@ -34,15 +34,5 @@ ls -lrt
 
 rm -f file_for_xtransfer pipe_name PRESSURE REMAP*
 
-ls -lrt 
-mkdir OUTPUT
-mv OUTPUT_L* OUTPUT
-mkdir LFI
-mv *.lfi LFI/.
-mv *.des LFI/.
-mkdir NETCDF
-mv *.nc NETCDF/.
-ja
-
 cd ../PYTHON
 sbatch run_python

MY_RUN/INTEGRATION_CASES/HPC/ARMCU_LES/DEAR/run_prep_ideal

@@ -29,7 +29,6 @@ rm -f ARM_3D_LF.??? ARM_PGD.???
 time ${MPIRUN} PREP_IDEAL_CASE${XYZ}
 mv OUTPUT_LISTING1  OUTPUT_LISTING1_ideal
  
-touch ARM_PGD.des
 ls -lrt 
 
 rm -f file_for_xtransfer pipe_name

MY_RUN/INTEGRATION_CASES/HPC/ARMCU_LES/HM21/run_mesonh

@@ -34,15 +34,5 @@ ls -lrt
 
 rm -f file_for_xtransfer pipe_name PRESSURE REMAP*
 
-ls -lrt 
-mkdir OUTPUT
-mv OUTPUT_L* OUTPUT
-mkdir LFI
-mv *.lfi LFI/.
-mv *.des LFI/.
-mkdir NETCDF
-mv *.nc NETCDF/.
-ja
-
 cd ../PYTHON
 sbatch run_python

MY_RUN/INTEGRATION_CASES/HPC/ARMCU_LES/HM21/run_prep_ideal

@@ -29,7 +29,6 @@ rm -f ARM_3D_LF.??? ARM_PGD.???
 time ${MPIRUN} PREP_IDEAL_CASE${XYZ}
 mv OUTPUT_LISTING1  OUTPUT_LISTING1_ideal
  
-touch ARM_PGD.des
 ls -lrt 
 
 rm -f file_for_xtransfer pipe_name

MY_RUN/INTEGRATION_CASES/HPC/ARMCU_LES/PYTHON/plot_ARMCU_LES_DEAR.py

@@ -17,7 +17,7 @@ os.system('rm -f tempgraph*')
 #
 #  User's parameter / Namelist
 #
-path="../DEAR/NETCDF/"
+path="../DEAR/"
 
 LnameFiles = ['ARM__.1.CEN4T.000.nc' ]
 

MY_RUN/INTEGRATION_CASES/HPC/ARMCU_LES/PYTHON/plot_ARMCU_LES_HM21.py

@@ -17,7 +17,7 @@ os.system('rm -f tempgraph*')
 #
 #  User's parameter / Namelist
 #
-path="../HM21/NETCDF/"
+path="../HM21/"
 
 LnameFiles = ['ARM__.1.CEN4T.000.nc' ]
 

MY_RUN/INTEGRATION_CASES/HPC/AZF_2M/007_run/EXSEG1.nam

@@ -30,7 +30,7 @@
 &NAM_DYN XSEGLEN = 3600, XASSELIN = 0.2, LCORIO = T, LNUMDIFU = T,
          XALKTOP = 0.003, XALZBOT = 15000. /
 &NAM_NESTING NDAD(2) = 1,NDTRATIO(2) =5 ,XWAY(2) = 2.  /
-&NAM_BACKUP XBAK_TIME(1,1)=0., XBAK_TIME(1,2)=60.,XBAK_TIME(1,3)=600.,XBAK_TIME(1,4)=900.,XBAK_TIME(1,5)=1800.,XBAK_TIME(1,6)=2700.,XBAK_TIME(1,7)=3600. /
+&NAM_BACKUP XBAK_TIME(1,1)=10., XBAK_TIME(1,2)=60.,XBAK_TIME(1,3)=600.,XBAK_TIME(1,4)=900.,XBAK_TIME(1,5)=1800.,XBAK_TIME(1,6)=2700.,XBAK_TIME(1,7)=3600. /
 &NAM_PASPOL
 LPASPOL   =  T  ,
 NRELEASE     =   2        ,

MY_RUN/INTEGRATION_CASES/HPC/MEGAN/REUNION_DMS/001_prep_pgd1/run_pgd.sh → MY_RUN/INTEGRATION_CASES/HPC/BIOMAIDO_DMS/001_prep_pgd1/run_pgd.sh

@@ -14,8 +14,6 @@ set -e
 # Nom de la machine
 hostname
 
-
-#. ~/DEV_57/MNH-PHYEX070-b95d84d7/conf/profile_mesonh-LXifort-R8I4-MNH-V5-6-2-ECRAD140-MPIAUTO-O2-PIERRE
 . ~/DEV_57/MNH-PHYEX070-b95d84d7/conf/profile_mesonh-LXifort-R8I4-MNH-V5-6-2-ECRAD140-MPIAUTO-O2
 ln -sf ~/SAVE/mesonh/PGD/* .
 ln -sf ~/SAVE/EMISSIONS_MEGAN/DATA/DATA_EMIS/* .