Skip to content
Snippets Groups Projects
ui.R 34.6 KiB
Newer Older
  • Learn to ignore specific revisions
  • thierrychambert's avatar
    thierrychambert committed
    rm(list = ls(all.names = TRUE))
    
    
    thierrychambert's avatar
    thierrychambert committed
    #~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    # Initial stuff
    {
      ## Load libraries
      library(shiny)
      library(shinyjs)
    
      library(shinyBS)
    
    thierrychambert's avatar
    thierrychambert committed
      library(shinyMatrix)
      library(tidyverse)
      library(eolpop)
    
      ## Load species list
      species_data <- read.csv("./inst/ShinyApp/species_list.csv", sep = ",")
      species_list <- unique(as.character(species_data$NomEspece))
    
      ## Load survival and fecundities data
      data_sf <- read.csv("./inst/ShinyApp/survivals_fecundities_species.csv", sep = ",")#, encoding = "UTF-8")
      (data_sf)
    
      # Fixed parameters (for now)
      nsim = 10
    
      coeff_var_environ = 0.03
    
    thierrychambert's avatar
    thierrychambert committed
      time_horzion = 30
      theta = 1 # DD parameter theta
    
      CP = 0.99 # Coverage probability for lower - upper values
    
    thierrychambert's avatar
    thierrychambert committed
    }
    #~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~###
    
    #~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    # Pre-fill data
    {
      ## Data elicitation pre-fill data
      # fatalities
      eli_fatalities <- c(1.0, 2, 5, 8,  0.80,
                          0.2, 0, 3, 6,  0.90,
                          0.2, 2, 4, 10, 0.90,
                          0.1, 1, 3, 7,  0.70)
    
      # population size
      eli_pop_size <-   c(1.0, 150, 200, 250, 0.80,
                          0.5, 120, 180, 240, 0.90,
                          0.8, 170, 250, 310, 0.90,
                          0.3, 180, 200, 230, 0.70)
    
      # carrying capacity
      eli_carrying_cap <- c(1.0, 500, 700, 1000, 0.80,
                            0.5, 1000, 1500, 2000, 0.90,
                            0.8, 800, 1200, 1600, 0.90,
                            0.3, 100, 1200, 1500, 0.70)
    
      # population growth rate
      eli_pop_growth <- c(1 , 0.95, 0.98, 1.00, 0.95,
                          0.2, 0.97, 1.00, 1.01, 0.90,
                          0.5, 0.92, 0.96, 0.99, 0.90,
                          0.3, 0.90, 0.95, 0.98, 0.70)
    
      ## Other pre-fill data
    
      # fatality table for cumulated impacts (several wind farms)
    
      set.seed(seed = 200)
      init_cumul <-
        matrix(
          round(c(
            runif(n = 20, 1, 10),
            runif(n = 20, 0.01, 0.20),
            sort(sample(x = 2000:2050, size = 20, replace = TRUE))
          ), 2),
        nrow = 20, ncol = 3, byrow = FALSE)
    
      # Undo last 'set.seed'
      set.seed(  ((((Sys.time() %>% as.numeric) %% 1e10) * 1e9) %% 1e5) %>% round  )
    
    thierrychambert's avatar
    thierrychambert committed
    #~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~###
    
    thierrychambert's avatar
    thierrychambert committed
    
    
    Marie-Bocage's avatar
    Marie-Bocage committed
    
    
    Marie-Bocage's avatar
    Marie-Bocage committed
    
    
    ###~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~###
    
    thierrychambert's avatar
    thierrychambert committed
    ##  User Interface
    
    ###~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~###
    
    thierrychambert's avatar
    thierrychambert committed
    # fluidPage
    {ui <- fluidPage(
    
    
    thierrychambert's avatar
    thierrychambert committed
      useShinyjs(),
    
    thierrychambert's avatar
    thierrychambert committed
      titlePanel("eolpop : Impact demographique des collisions aviaires avec les oliennes"),
    
    Marie-Bocage's avatar
    Marie-Bocage committed
    
    
    
    thierrychambert's avatar
    thierrychambert committed
      ###~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~###
      # Head Panel 1 : type of analysis and species
      {wellPanel(
        {fluidRow(
    
          # Select type of analysis : cumulated impacted or not
          {column(width = 4,
    
                  # Choose analysis type (radioButton)
    
                  {radioButtons(inputId = "analysis_choice",
                               label = h4(strong("Type d'analyse"),
                                          bsButton("Q_analysis_choice", label = "", icon = icon("question"), size = "extra-small"),
                                          bsPopover(id = "Q_analysis_choice",
                                                    title = "Choix du type d\\'analyse",
                                                    content = HTML(
    
                                                      "<b>Impacts non cumuls</b> : pour analyser l\\'impact d\\'<b>un seul parc olien</b>. <br><br> <b>Impact cumuls</b> : pour analyser l\\'impact de <b>plusieurs parcs oliens</b> (attention : il faudra fournir des valeurs de mortalits propres  chaque parc)."
    
                                                    ),
                                                    placement = "right",
                                                    trigger = "click",
                                                    options = list(container='body')
                                          )
                               ),
                               choices = c("Impacts non cumuls" = "scenario", "Impacts cumuls" = "cumulated")
                  )},
    
    
                  # Choose species (selectInput)
    
                  {selectInput(inputId = "species_choice",
    
                              selected = "Faucon crcerellette", width = '80%',
    
                              label = h4(strong("Slectionner une espce"),
                                         bsButton("Q_species_choice", label = "", icon = icon("question"), size = "extra-small"),
                                         bsPopover(id = "Q_species_choice",
                                                   title = "Choix de l\\'espce",
                                                   content = HTML(
                                                     "Ncessaire pour fixer les valeurs de <b>paramtres dmographiques</b> (survie, fcondit). <br> La liste fournie correspond  une liste d\\'espces prioritaires. Au besoin, une option \\'espce gnrique\\' est disponible  la fin de la liste."
                                                   ),
                                                   placement = "right",
                                                   trigger = "click",
                                                   options = list(container='body')
                                         )
                              ),
                              choices = species_list)},
    
    thierrychambert's avatar
    thierrychambert committed
          )}, # close column
    
    
          # Show vital rate values (tableOutput)
    
    thierrychambert's avatar
    thierrychambert committed
          {column(width = 4,
                  fluidRow(
    
                    h4(strong("Paramtres dmographiques"),
                       bsButton("Q_vital_rates_info", label = "", icon = icon("question"), size = "extra-small"),
                       bsPopover(id = "Q_vital_rates_info",
                                 title = "Paramtres dmographiques",
                                 content = HTML(
                                   "Valeurs de <b>survie et fcondits par classe d\\'ge</b>, pour l\\'espce slectionne. <br><br><b>Juv 0</b> correspond  un individu n dans l\\'anne, n\\'ayant <u>pas encore</u> 1 an rvolu.<br><b>Juv 1</b> correspond  un individu ayant 1 an rvolu, donc dans sa 2<sup>e</sup> anne de vie.<br>Etc."
                                   ),
                                   placement = "right",
                                 trigger = "click",
                                 options = list(container='body')
                       )
                    ),
    
    thierrychambert's avatar
    thierrychambert committed
                    tableOutput(outputId = "vital_rates_info"),
                  ),
          )}, # close column
    
    
    
          ## Modify vital rates, if needed (actionButton and matrixInput)
    
    thierrychambert's avatar
    thierrychambert committed
          {column(width = 4,
                  tags$style(HTML('#button_vital_rates{background-color:#C2C8D3}')),
                  actionButton(inputId = "button_vital_rates",
                               label = tags$span("Modifier les paramtres dmographiques",
                                                 style = "font-weight: bold; font-size: 18px;")
                  ),
    
                  br(),
                  matrixInput(inputId = "mat_fill_vr",
                              label = "",
                              value = matrix(data = NA, 3, 2,
                                             dimnames = list(c("Juv 1", "Juv 2", "Adulte"), c("Survie", "Fcondit"))),
                              class = "numeric",
                              rows = list(names = TRUE),
                              cols = list(names = TRUE)
                  )
    
          )}, # close column
    
        )}, # End fluidRow
      )}, # End wellPanel
      ###~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~###
    
      ###~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~###
    
    thierrychambert's avatar
    thierrychambert committed
      # Head Panel 2 : Model parameters
      {wellPanel(
    
    
    thierrychambert's avatar
    thierrychambert committed
        ## Enter parameter values (TITLE)
        {p("Saisie des paramtres", style="font-size:28px",
    
          bsButton("Q_param_enter", label = "", icon = icon("question"), size = "extra-small"),
          bsPopover(id = "Q_param_enter",
                    title = "Saisie des paramtres pour l\\'analyse",
                    content = HTML(
                    "Cliquer sur les boutons ci-dessous pour saisir les valeurs des quatre paramtres requis pour l\\'analyse : <br>(1) Mortalits annuelles, <br>(2) Taille de la population, <br>(3) Tendance de la population, <br>(4) Capacit de charge."
                    ),
                    placement = "right",
                    trigger = "click",
                    options = list(container='body')
          )
    
    thierrychambert's avatar
    thierrychambert committed
        )},
    
    thierrychambert's avatar
    thierrychambert committed
    
        {fluidRow(
    
          ##~~~~~~~~~~~~~~~~~~~~~~~~~
          ##  1. Fatalities
          ##~~~~~~~~~~~~~~~~~~~~~~~~~
          {column(width = 3,
    
                  tags$style(HTML('#button_fatalities{background-color:#C2C8D3}')),
    
                  actionButton(inputId = "button_fatalities", width = '100%',
    
    thierrychambert's avatar
    thierrychambert committed
                               label = tags$span("Mortalits annuelles", style = "font-weight: bold; font-size: 18px;")
                  ),
    
                  bsPopover(id = "button_fatalities",
                            title = "Mortalits annuelles",
                            content = HTML(
                            "Nombre de mortalits totales <b><u>annuelles</u> (cad. sur 12 mois) </b> attendues, pour l\\'espce slectionne, sur chaque parc olien concern (somme des mortalits attendues sur toutes les oliennes d\\'un parc)."
                            ),
                            placement = "top",
                            trigger = "hover",
                            options = list(container='body')
                  ),
    
    thierrychambert's avatar
    thierrychambert committed
    
                  ### Part for non-cumulated impacts
                  # Input type
    
                  {conditionalPanel("output.hide_fatalities",
                                    br(),
    
                                    {wellPanel(style = "background:#F0F8FF",
    
                                               radioButtons(inputId = "fatalities_input_type",
                                                            label = "Type de saisie",
    
                                                            choices = c("Intervalle" = "itvl",
                                                                        "Valeurs" = "val",
                                                                        "Elicitation d'expert" = "eli_exp")),
    
                                               numericInput(inputId = "fatalities_lower",
    
                                                            label = "Borne infrieure (mortalits annuelles)",
                                                            value = 0.5,
                                                            min = 0, max = Inf, step = 0.5),
    
                                               numericInput(inputId = "fatalities_upper",
                                                            label = "Borne suprieure (mortalits annuelles)",
                                                            value = 2.5,
                                                            min = 0, max = Inf, step = 0.5),
    
    
                                               # Values
                                               numericInput(inputId = "fatalities_mean",
                                                            label = "Moyenne (mortalits annuelles)",
                                                            value = 2.2,
                                                            min = 0, max = Inf, step = 0.5),
    
                                               numericInput(inputId = "fatalities_se",
                                                            label = "Erreur-type (mortalits annuelles)",
                                                            value = 0.5,
                                                            min = 0, max = Inf, step = 0.1),
    
    
                                               # Matrix for expert elicitation
                                               matrixInput(inputId = "fatalities_mat_expert",
                                                           value = matrix(data = eli_fatalities, nrow = 4, ncol = 5,
                                                                          dimnames = list(c("#1", "#2", "#3", "#4"),
                                                                                          c("Poids", "Min", "Best", "Max", "% IC" )),
                                                                          byrow = TRUE),
                                                           class = "numeric",
                                                           rows = list(names = TRUE),
                                                           cols = list(names = TRUE)),
    
                                               actionButton(inputId = "fatalities_run_expert", label = "Utiliser valeurs experts"),
    
                                               ### Part for cumulated impacts
    
                                               numericInput(inputId = "farm_number_cumulated",
                                                            label = "Nombre de parcs oliens",
                                                            value = 3, min = 2, max = Inf, step = 1),
    
                                               matrixInput(inputId = "fatalities_mat_cumulated",
    
                                                           label = span("Mortalits dans chaque parc",
                                                                          bsButton("Q_fatalities_mat_cumulated", label = "", icon = icon("question"), size = "extra-small"),
                                                                          bsPopover(id = "Q_fatalities_mat_cumulated",
                                                                                    title = "Mortalits cumules",
                                                                                    content = HTML(
                                                                                      "1 ligne = 1 parc <br><br>Les parcs doivent tre fournis dans l\\'<b>ordre chronologique</b> de leur mise en service (\\'Anne dbut\\'). <br><br>Pour chaque parc, veuillez indiquer la <u>moyenne</u> et l\\'<u>erreur-type</u> du nombre de mortalits estimes, ainsi que son <u>anne de mise en service</u>."
                                                                                      ),
                                                                                    placement = "right",
                                                                                    trigger = "click",
                                                                                    options = list(container='body')
                                                                          )
                                                           ),
    
                                                           value = matrix(init_cumul, 3, 3,
    
                                                                          dimnames = list(c(paste0("Parc num.", c(1:3))),
    
                                                                                          c("Moyenne",
                                                                                            "Erreur-type",
                                                                                            "Anne de mise en service du parc"))),
                                                           class = "numeric",
                                                           rows = list(names = TRUE),
                                                           cols = list(names = TRUE)),
                                    )}, # close wellPanel
    
                  )}, # close conditional panel
    
    thierrychambert's avatar
    thierrychambert committed
    
          )}, # end column "mortalit"
    
    Marie-Bocage's avatar
    Marie-Bocage committed
    
    
    thierrychambert's avatar
    thierrychambert committed
          ###~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~###
    
    Marie-Bocage's avatar
    Marie-Bocage committed
    
    
    
    thierrychambert's avatar
    thierrychambert committed
          ##~~~~~~~~~~~~~~~~~~~~~~~~~
          ##  2. Population Size
          ##~~~~~~~~~~~~~~~~~~~~~~~~~
          {column(width = 3,
    
                  tags$style(HTML('#button_pop_size{background-color:#C2C8D3}')),
    
                  actionButton(inputId = "button_pop_size", width = '100%',
    
    thierrychambert's avatar
    thierrychambert committed
                               label = tags$span("Taille de la population", style = "font-weight: bold; font-size: 18px;")
                  ),
    
                  bsPopover(id = "button_pop_size",
                            title = "Taille de la population",
                            content = HTML(
                            "Effectif de la population cible pour l\\'analyse d\\'impact. <br> Il peut s\\'agir soit du <b>nombre de couples</b>, soit de l\\'<b>effectif total</b> de la population (cad. toutes classes d\\'ge incluses)."
                            ),
                            placement = "top",
                            trigger = "hover",
                            options = list(container='body')
                  ),
    
                  {conditionalPanel("output.hide_pop_size",
                                  br(),
    
                                  {wellPanel(style = "background:#FFF8DC",
    
    thierrychambert's avatar
    thierrychambert committed
                                     radioButtons(inputId = "pop_size_unit", inline = TRUE,
                                                  label = "Unit",
    
                                                  choices = c("Nombre de couples" = "Npair", "Effectif total" = "Ntotal"),
    
                                                  selected = "Npair"),
    
                                  {wellPanel(style = "background:#F0F8FF",
    
                                             radioButtons(inputId = "pop_size_input_type",
                                                          label = "Type de saisie",
    
                                                          choices = c("Intervalle" = "itvl",
                                                                      "Valeurs" = "val",
                                                                      "Elicitation d'expert" = "eli_exp")),
    
                                             # Interval
                                             numericInput(inputId = "pop_size_lower",
                                                          label = "Borne infrieure (taille population)",
                                                          value = 130,
                                                          min = 0, max = Inf, step = 10),
    
                                             numericInput(inputId = "pop_size_upper",
                                                          label = "Borne suprieure (taille population)",
                                                          value = 140,
                                                          min = 0, max = Inf, step = 10),
    
                                             # Values
    
                                             numericInput(inputId = "pop_size_mean",
                                                          label = "Moyenne de la taille de la population",
                                                          value = 200,
                                                          min = 0, max = Inf, step = 50),
    
                                             numericInput(inputId = "pop_size_se",
                                                          label = "Erreur-type de la taille de la population",
                                                          value = 25,
                                                          min = 0, max = Inf, step = 1),
    
                                             # Matrix for expert elicitation
    
                                             matrixInput(inputId = "pop_size_mat_expert",
                                                         value = matrix(data = eli_pop_size, nrow = 4, ncol = 5,
                                                                        dimnames = list(c("#1", "#2", "#3", "#4"),
                                                                                        c("Poids", "Min", "Best", "Max", "% IC" )),
                                                                        byrow = TRUE),
                                                         class = "numeric",
                                                         rows = list(names = TRUE),
                                                         cols = list(names = TRUE)),
    
                                             actionButton(inputId = "pop_size_run_expert", label = "Utiliser valeurs experts"),
                                  )}, # close wellPanel 2
    
                  )}, # close conditional panel
    
          ###~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~###
    
    Marie-Bocage's avatar
    Marie-Bocage committed
    
    
    thierrychambert's avatar
    thierrychambert committed
    
          ##~~~~~~~~~~~~~~~~~~~~~~~~~
          ##  3. Population Growth
          ##~~~~~~~~~~~~~~~~~~~~~~~~~
          {column(width = 3,
    
    
                  tags$style(HTML('#button_pop_growth{background-color:#C2C8D3}')),
                  actionButton(inputId = "button_pop_growth", width = '100%',
    
    thierrychambert's avatar
    thierrychambert committed
                               label = tags$span("Tendance de la population", style = "font-weight: bold; font-size: 18px;")
                  ),
    
                  bsPopover(id = "button_pop_growth",
                            title = "Tendance de la population",
                            content = HTML(
                            "<b>Taux de croissance annuel (&lambda;) </b> de la population (avec &lambda; = 1 pour une population stable). <br>A dfaut, on pourra juste cocher la <b>tendance globale</b> (dclin, stabilit ou croissance) et l\\'intensit de cette tendance (faible, moyenne, forte)."
                            ),
                            placement = "top",
                            trigger = "hover",
                            options = list(container='body')
                  ),
    
                  {conditionalPanel("output.hide_pop_growth",
                                    br(),
    
                                    {wellPanel(style = "background:#F0F8FF",
    
                                               radioButtons(inputId = "pop_growth_input_type",
                                                            label = "Type de saisie",
    
                                                            choices = c("Intervalle" = "itvl",
                                                                        "Taux d'accroissement" = "val",
    
                                                                        "Elicitation d'expert" = "eli_exp",
                                                                        "Tendance locale ou rgionale" = "trend")),
    
                                               # Interval
                                               numericInput(inputId = "pop_growth_lower",
                                                            label = "Borne infrieure (taux d'accroissement)",
                                                            value = 1.05,
                                                            min = 0, max = Inf, step = 0.01),
    
                                               numericInput(inputId = "pop_growth_upper",
                                                            label = "Borne suprieure (taux d'accroissement)",
                                                            value = 1.10,
                                                            min = 0, max = Inf, step = 0.01),
    
                                               ## Input values: mean and se
    
                                               numericInput(inputId = "pop_growth_mean",
    
                                                            label = "Moyenne (taux d'accroissement)",
    
    thierrychambert's avatar
    thierrychambert committed
                                                            value = 0.99,
    
                                                            min = 0, max = Inf, step = 0.01),
    
                                               numericInput(inputId = "pop_growth_se",
    
                                                            label = "Erreur-type (taux d'accroissement)",
    
                                               ## Input expert elicitation: table
    
                                               matrixInput(inputId = "pop_growth_mat_expert",
                                                           value = matrix(data = eli_pop_growth, nrow = 4, ncol = 5,
                                                                          dimnames = list(c("#1", "#2", "#3", "#4"),
                                                                                          c("Poids", "Min", "Best", "Max", "% IC" )),
                                                                          byrow = TRUE),
                                                           class = "numeric",
                                                           rows = list(names = TRUE),
                                                           cols = list(names = TRUE)),
    
                                               actionButton(inputId = "pop_growth_run_expert", label = "Utiliser valeurs experts"),
    
    
                                               ## Input trend: radio buttons
                                               {fluidRow(
                                                 # Trend
                                                 column(6,
                                                        radioButtons(inputId = "pop_trend",
                                                                     label = "Tendance",
    
                                                                     choices = c("Croissance" = "growth",
                                                                                 "Stable" = "stable",
                                                                                 "Dclin" = "decline")),
    
                                                 ),
    
                                                 # Strength of trend
                                                 column(6,
                                                        radioButtons(inputId = "pop_trend_strength",
                                                                     label = "Force",
    
                                                                     choices = c("Faible" = "weak",
                                                                                 "Moyen" = "average",
                                                                                 "Fort" = "strong")),
    
                                                 ),
                                               )}, # close fluidRow
    
    
                                    )}, # close wellPanel
    
                  )}, # close conditional panel
    
          ###~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~###
    
    Marie-Bocage's avatar
    Marie-Bocage committed
    
    
    Marie-Bocage's avatar
    Marie-Bocage committed
    
    
    thierrychambert's avatar
    thierrychambert committed
          ##~~~~~~~~~~~~~~~~~~~~~~~~~
          ##  4. Carrying capacity
          ##~~~~~~~~~~~~~~~~~~~~~~~~~
          {column(width = 3,
    
    Marie-Bocage's avatar
    Marie-Bocage committed
    
    
    thierrychambert's avatar
    thierrychambert committed
                  tags$style(HTML('#button_carrying_cap{background-color:#C2C8D3}')),
    
                  actionButton(inputId = "button_carrying_cap", width = '100%',
    
    thierrychambert's avatar
    thierrychambert committed
                               label = tags$span("Capacit de charge", style = "font-weight: bold; font-size: 18px;")
                  ),
    
    Marie-Bocage's avatar
    Marie-Bocage committed
    
    
                  bsPopover(id = "button_carrying_cap",
                            title = "Capacit de charge",
                            content = HTML(
                              "La capacit de charge correspond  la <b>taille maximale que peut atteindre la population</b> dans son environnement et les limites spatiales considres. <br><br><u>Note:</u> Ce chiffre sera exprim dans la <b>mme unit</b> que la taille de population (cad. nombre de couples ou effectif total). <br>Il n\\'a pas besoin d\\'tre trs prcis&nbsp;; il doit simplement fournir un ordre de grandeur de la taille limite au-del de laquelle la population ne peut plus crotre (environnement local satur)."
                              ),
                            placement = "top",
                            trigger = "hover",
                            options = list(container='body')
                  ),
    
    
    
                  {conditionalPanel("output.hide_carrying_cap",
                                    br(),
    
                                    {wellPanel(style = "background:#FFF8DC",
                                               span(textOutput(outputId = "carrying_cap_unit_info"), style="font-size:16px"),
    
                                    )}, # close wellPanel 1
    
                                    {wellPanel(style = "background:#F0F8FF",
    
                                               radioButtons(inputId = "carrying_cap_input_type",
                                                            label = "Type de saisie",
                                                            choices = c("Valeurs" = "val", "Elicitation d'expert" = "eli_exp")),
    
                                               numericInput(inputId = "carrying_capacity",
                                                            label = "Capacit de charge",
                                                            value = 500,
                                                            min = 0, max = Inf, step = 100),
    
                                               matrixInput(inputId = "carrying_cap_mat_expert",
                                                           value = matrix(data = eli_carrying_cap, nrow = 4, ncol = 5,
                                                                          dimnames = list(c("#1", "#2", "#3", "#4"),
                                                                                          c("Poids", "Min", "Best", "Max", "% IC" )),
                                                                          byrow = TRUE),
                                                           class = "numeric",
                                                           rows = list(names = TRUE),
                                                           cols = list(names = TRUE)),
    
                                               actionButton(inputId = "carrying_cap_run_expert", label = "Utiliser valeurs experts"),
    
                                    )}, # close wellPanel 2
    
    Marie-Bocage's avatar
    Marie-Bocage committed
    
    
    Marie-Bocage's avatar
    Marie-Bocage committed
    
    
    thierrychambert's avatar
    thierrychambert committed
          ###~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~###
    
    Marie-Bocage's avatar
    Marie-Bocage committed
    
    
    Marie-Bocage's avatar
    Marie-Bocage committed
    
    
    thierrychambert's avatar
    thierrychambert committed
        )}, # # End fluidRow
    
    thierrychambert's avatar
    thierrychambert committed
      )}, # # End wellPanel
      ###~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~###
    
    thierrychambert's avatar
    thierrychambert committed
      ###~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~###
      ##  Side Panel : Parameter information
      {sidebarLayout(
        {sidebarPanel(
    
          p("Valeurs slectionnes", style="font-size:28px",
            bsButton("Q_selected_values", label = "", icon = icon("question"), size = "extra-small"),
            bsTooltip(id = "Q_selected_values",
                      title = "Rappel des valeurs de paramtres actuellement slectionnes.",
                      placement = "right",
                      trigger = "click",
                      options = list(container='body')
            )
          ),
    
    thierrychambert's avatar
    thierrychambert committed
          {wellPanel(style = "background:#DCDCDC",
                     p("Mortalits annuelles", style="font-size:20px; font-weight: bold"),
                     span(textOutput(outputId = "fatalities_mean_info"), style="font-size:16px"),
                     span(textOutput(outputId = "fatalities_se_info"), style="font-size:16px"),
          )},
    
    thierrychambert's avatar
    thierrychambert committed
          # Taille de population
          {wellPanel(style = "background:#DCDCDC",
                     p("Taille de la population", style="font-size:20px; font-weight: bold"),
                     shiny::tags$u(textOutput(outputId = "pop_size_unit_info"), style="font-size:16px"),
                     p(""),
                     span(textOutput(outputId = "pop_size_mean_info"), style="font-size:16px"),
                     span(textOutput(outputId = "pop_size_se_info"), style="font-size:16px"),
    
    Marie-Bocage's avatar
    Marie-Bocage committed
    
    
    thierrychambert's avatar
    thierrychambert committed
          # Tendance de la population
          {wellPanel(style = "background:#DCDCDC",
                     p("Tendance de la population", style="font-size:20px; font-weight: bold"),
                     span(textOutput(outputId = "pop_growth_mean_info"), style="font-size:16px"),
                     span(textOutput(outputId = "pop_growth_se_info"), style="font-size:16px"),
          )},
    
    Marie-Bocage's avatar
    Marie-Bocage committed
    
    
    thierrychambert's avatar
    thierrychambert committed
          {wellPanel(style = "background:#DCDCDC",
                     p("Capacit de charge", style="font-size:20px; font-weight: bold"),
                     span(textOutput(outputId = "carrying_capacity_info"), style="font-size:16px"),
          )},
    
    Marie-Bocage's avatar
    Marie-Bocage committed
    
    
    
    thierrychambert's avatar
    thierrychambert committed
        )}, # End sidebarPanel
    
    Marie-Bocage's avatar
    Marie-Bocage committed
    
    
    Marie-Bocage's avatar
    Marie-Bocage committed
    
        #~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    
    
    
    Marie-Bocage's avatar
    Marie-Bocage committed
    
        # Creation of outputs parts
    
    
    thierrychambert's avatar
    thierrychambert committed
        {mainPanel(
    
    thierrychambert's avatar
    thierrychambert committed
          tabsetPanel(
    
            tabPanel(title = "Distribution paramtres",
                     br(),
                     hr(),
    
    
                     #h3("Mortalites annuelles", align = "center"),
    
                     span(textOutput(outputId = "title_distri_plot"), style="font-size:24px; font-weight:bold"),
                     plotOutput(outputId = "distri_plot"),
    
    thierrychambert's avatar
    thierrychambert committed
            tabPanel(title = "Impact population",
    
                     br(),
                     numericInput(inputId = "nsim",
                                  label = "Nombre de simulations",
    
    thierrychambert's avatar
    thierrychambert committed
    
                     radioButtons(inputId = "fatal_constant",
    
                                  label = "Modlisation",
    
    thierrychambert's avatar
    thierrychambert committed
                                  choices = c("Taux de mortalits (h) constant" = "h",
                                              "Nombre de mortalits (M) constant" = "M")),
    
                     br(),
    
    
                     actionButton(inputId = "run", label = "Lancer l'analyse"),
                     hr(),
    
                     span(textOutput("title_impact_result"), align = "left", style = "font-weight: bold; font-size: 18px;"),
                     br(),
    
                     strong(span(textOutput("impact_text"), style="color:blue; font-size:18px", align = "left")),
                     strong(span(tableOutput("impact_table"), style="color:blue; font-size:18px", align = "left")),
    
    Marie-Bocage's avatar
    Marie-Bocage committed
                     br(),
    
    thierrychambert's avatar
    thierrychambert committed
                     hr(),
    
    
                     tags$h4(textOutput("title_impact_plot"), align = "center"),
                     plotOutput("impact_plot", width = "100%", height = "550px"),
    
    Marie-Bocage's avatar
    Marie-Bocage committed
                     hr(),
    
                     tags$h4(textOutput("title_traj_plot"), align = "center"),
                     plotOutput("traj_plot", width = "100%", height = "550px")
    
            ), # End tabPanel
    
    Marie-Bocage's avatar
    Marie-Bocage committed
            tabPanel(title = "Rapport",
                     br(),
                     radioButtons(inputId = "lifestyle",
    
                                  h4("Mode de vie de l'espce"),
                                  choices = c("Sdentaire", "Non-sdentaire nicheur", "Non-sdentaire hivernant", "Migrateur de passage")),
    
    thierrychambert's avatar
    thierrychambert committed
                     numericInput(inputId = "wind_farm_nb",
    
    Marie-Bocage's avatar
    Marie-Bocage committed
                                  h4("Nombre de parcs"),
                                  value = 1, min = 0, max = Inf, step = 1),
    
    thierrychambert's avatar
    thierrychambert committed
                     numericInput(inputId = "wind_turbine_nb",
    
                                  h4("Nombre d'oliennes"),
    
    Marie-Bocage's avatar
    Marie-Bocage committed
                                  value = 1, min = 0, max = Inf, step = 1)
    
    thierrychambert's avatar
    thierrychambert committed
    
    
    Marie-Bocage's avatar
    Marie-Bocage committed
            ) # End tabPanel
    
    Marie-Bocage's avatar
    Marie-Bocage committed
          ) # End tabSetPanel
    
    thierrychambert's avatar
    thierrychambert committed
        )} # End mainPanel
    
      )} # sidebarLayout
    
    )} # FluidPage
    
    thierrychambert's avatar
    thierrychambert committed
    # End UI #~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~###
    
    Marie-Bocage's avatar
    Marie-Bocage committed